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Professor Jonathan Jones

Group Leader
Jonathan Jones Group

My group is interested in how plants resist disease, and in how resistance is overcome by pathogens.  To suppress host defence, pathogens secrete effector proteins into plant cells or into their apoplastic spaces.  How these effectors work, and the identity of their targets in the host, help us understand plant defence mechanisms.

We work on the following problems.

  1. How do plant NB-LRR disease resistance proteins recognize pathogen effectors and then activate defence?
  2. What are the effectors of the Arabidopsis downy mildew and white rust pathogens (Hyaloperonospora arabidopsidis and Albugo sp), and how do they suppress host defences?
  3. Can we find and clone new sources of resistance to potato late blight from wild Solanum species?

Publications

Asai et al PLOS Path 2014

Asai S, Rallapalli G, Piquerez SJM, Caillaud MC, Furzer OJ, Ishaque N, Wirthmueller L, Fabro G, Shirasu K, Jones JDG (2014)

Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid. PLoS Pathog 10(10): e1004443. doi:10.1371/journal.ppat.1004443

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Wirthmueller L, Roth C, Fabro G, Caillaud MC, Rallapalli G, Asai S, Sklenar J, Jones AM, Wiermer M, Jones JD, Banfield MJ. (2014)

Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector. Plant Journal (2014) doi: 10.1111/tpj.12691

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Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P. (2014)

Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life. Cell Host & Microbe 16: 364 – 375 (2014) DOI: http://dx.doi.org/10.1016/j.chom.2014.08.004

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Kamoun S, Furzer O, Jones JD, Judelson HS, Ali GS, Dalio RJ, Roy SG, Schena L, Zambounis A, Panabières F, Cahill D, Ruocco M, Figueiredo A, Chen XR, Hulvey J, Stam R, Lamour K, Gijzen M, Tyler BM, Grünwald NJ, Mukhtar MS, Tomé DF, Tör M, Van den Ackerveken G, McDowell J, Daayf F, Fry WE, Lindqvist-Kreuze H, Meijer HJ, Petre B, Ristaino J, Yoshida K, Birch PR, Govers F. (2014)

The Top 10 oomycete pathogens in molecular plant pathology. Mol Plant Pathol. 2014 Sep 1. doi: 10.1111/mpp.12190. [Epub ahead of print] PubMed PMID: 25178392.

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Zhou X, Graumann K, Wirthmueller L, Jones JD, Meier I. (2014)

Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. J Cell Biol. 2014 Jun 9;205(5):677-92.

Ghanasyam Rallapalli, Eric Kemen, Alexandre Robert-Seilaniantz, Cecile Segonzac, Graham Etherington, Kee Sohn, Daniel MacLean, and Jonathan Jones. (2014)

Exprss: an illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics, 15(1):341

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Andolfo G, Jupe F, Witek K, Etherington GJ, Ercolano MR and Jones JDG (2014)

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq. BMC Plant Biology 2014, 14:120 doi:10.1186/1471-2229-14-120

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Jupe F, Chen X, Verweij W, Witek K, Jones JDG and Hein I. (2014)

Genomic DNA Library Preparation for Resistance Gene Enrichment and Sequencing (RenSeq) in Plants. Methods in Molecular Biology. (Clifton, N.J.) 1127:291-303.

Williams SJ, Sohn KH, Wan L, Bernoux M, Sarris PF, Segonzac C, Ve T, Ma Y, Saucet SB, Ericsson DJ, Casey LW, Lonhienne T, Winzor DJ, Zhang X, Coerdt A, Parker JE, Dodds PN, Kobe B, Jones JDG. (2014)

Structural Basis for Assembly and Function of a Heterodimeric Plant Immune Receptor. SCIENCE, 344(6181):299-303.

Kadota Y, Sklenar J, Derbyshire P, Stransfeld L, Asai S, Ntoukakis V, Jones JDG, Shirasu K, Menke FL, Jones A and Zipfel C (2014)

Direct regulation of the NADPH oxidase RBOHD by the PRR-associated kinase BIK1 during plant immunity. Molecular Cell, 54 (1): 43-55.

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Jones J. D., Witek K., Verweij W., Jupe F., Cooke D., Dorling S., Tomlinson L., Smoker M., Perkins S., Foster S. (2014)

Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B 369 20130087

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Badel JL, Piquerez SJ, Greenshields D, Rallapalli G, Fabro G, Ishaque N, Jones JD. (2013)

In planta effector competition assays detect Hyaloperonospora arabidopsidis effectors that contribute to virulence and localize to different plant subcellular compartments. Mol Plant Microbe Interact 26: 745-757.

Caillaud MC, Asai S, Rallapalli G, Piquerez S, Fabro G, Jones JD. (2013)

A downy mildew effector attenuates salicylic Acid-triggered immunity in Arabidopsis by interacting with the host mediator complex. PLoS Biol 11: e1001732

Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JD. (2013)

Resistance gene enrichment sequencing (renseq) enables reannotation of the nb-lrr gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. The Plant Journal, 76(3):530–544

Asai S, Ichikawa T, Nomura H, Kobayashi M, Kamiyoshihara Y, Mori H, Kadota Y, Zipfel C, Jones JDG and Yoshioka H (2013)

The variable domain of a plant calcium-dependent protein kinase (CDPK) confers subcellular localization and substrate recognition for NADPH oxidase. JBC, 288(20):14332-14340.

Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan DG Jones, Mario Caccamo, and Daniel MacLean. (2013)

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs. PloS ONE, 8(3):e60058

Caillaud MC, Wirthmueller L, Fabro G, Piquerez SJ, Asai S, Ishaque N, Jones JD. (2012)

Mechanisms of Nuclear Suppression of Host Immunity by Effectors from the Arabidopsis Downy Mildew Pathogen Hyaloperonospora arabidopsidis (Hpa). Cold Spring Harb Symp Quant Biol. 2012 Dec 4.

Sohn KH, Hughes RK, Piquerez SJ, Jones JD, Banfield MJ.

Distinct regions of the Pseudomonas syringae coiled-coil effector AvrRps4 are required for activation of immunity. Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16371-6. doi: 10.1073/pnas.1212332109. Epub 2012 Sep 17

Sohn KH, Hughes RK, Piquerez SJ, Jones JD, Banfield MJ. (2012)

Draft genome sequence of Pseudomonas syringae pathovar syringae strain FF5, causal agent of stem tip dieback disease on ornamental pear. J Bacteriol. 2012 Jul;194(14):3733-4. doi: 10.1128/JB.00567-12.

Solé M, Popa C, Mith O, Sohn KH, Jones JD, Deslandes L, Valls M. (2012)

The awr gene family encodes a novel class of Ralstonia solanacearum type III effectors displaying virulence and avirulence activities. Mol Plant Microbe Interact. 2012 Jul;25(7):941-53. doi: 10.1094/MPMI-12-11-0321.

Kemen E, Jones JD. (2012)

Obligate biotroph parasitism: can we link genomes to lifestyles? Trends Plant Sci. 2012 Aug;17(8):448-57. doi: 10.1016/j.tplants.2012.04.005. Epub 2012 May 19

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. (2012)

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

Bailey K, Cevik V, Holton N, Byrne-Richardson J, Sohn KH, Coates M, Woods-Tor A, Aksoy HM, Hughes L, Baxter L, Jones JD, Beynon J, Holub EB and Tor M (2011)

Molecular cloning of ATR5(Emoy2) from Hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis. Mol Plant Microbe Interact 24, 827-838.

Jupe F, Pritchard L, Etherington GJ, MacKenzie K, Cock PJ, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones JDG, Hein I (2012)

Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics 15;13:75.

Caillaud MC, Piquerez SJ, Jones JD. (2012)

Characterization of the membrane-associated HaRxL17 Hpa effector candidate. Plant Signal Behav. 2012 Jan;7(1):145-9. doi: 10.4161/psb.7.1.18450.

Caillaud MC, Piquerez SJ, Fabro G, Steinbrenner J, Ishaque N, Beynon J, Jones JD. (2012)

Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility. Plant J. 2012 Jan;69(2):252-65. doi: 10.1111/j.1365-313X.2011.04787.x. Epub 2011 Nov 29.

G. Fabro, J. Steinbrenner, M. Coates, N. Ishaque, L. Baxter, D.J. Studholme E. Körner, R.L. Allen, S.J.M. Piquerez, A. Rougon-Cardoso, D. Greenshields, R. Lei, Jorge L. Badel, M.-C. Caillaud, K.-H. Sohn, G.Van den Ackerveken, J.E. Parker, J. Beynon and J D. G. Jones. (2011)

Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLOS Pathogens e1002348

Wirthmueller L, Jones JD, Banfield MJ (2011)

Crystallization and preliminary X-ray diffraction analysis of the RxLR-type effector RxLR3 from the oomycete pathogen Hyaloperonospora arabidopsidis (2011). Acta Crystallogr Sect F Struct Biol Cryst Commun. 67(Pt 11):1417-20.

Grierson CS, Barnes SR, Chase MW, Clarke M, Grierson D, Edwards KJ, Jellis GJ, Jones JD, Knapp S, Oldroyd G, Poppy G, Temple P, Williams R, Bastow R.

One hundred important questions facing plant science research (2011) New Phytol. 192(1):6-12.

Robert-Seilaniantz A, Grant M, Jones JD. (2011)

Hormone crosstalk in plant disease and defense: more than just salicylate/jasmonate antagonism Annu Rev Phytopathol. 2011 49:317-43.

Eric Kemen, Anastasia Gardiner, Torsten Schultz-Larsen, Ariane C Ke- men, Alexi L Balmuth, Alexandre Robert-Seilaniantz, Kate Bailey, Eric Holub, David J Studholme, Dan MacLean, et al. (2011)

Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of arabidopsis thaliana. PLoS Biology, 9(7):e1001094

Caillaud MC, Piquerez SJ, Fabro G, Steinbrenner J, Ishaque N, Beynon J, Jones JD. (2011)

Subcellular localization of the Hpa effector repertoire identifies a tonoplast-associated protein, HaRxL17, that confers enhanced host susceptibility Plant J. (in press).

Alexandre Robert-Seilaniantz, Dan MacLean, Yusuke Jikumaru, Lionel Hill, Shinjiro Yamaguchi, Yuji Kamiya, and Jonathan DG Jones. (2011)

The microrna mir393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates. The Plant Journal, 67(2):218–231

Jones JD. (2011)

Why genetically modified crops? Philos Transact A Math Phys Eng Sci. May 13;369(1942):1807-16. PubMed PMID: 21464072.

Baxter, L., Tripathy, S., Ishaque, N., Boot, N., Cabral, A., Kemen, E., Thines, M., Ah-Fong, A., Anderson, R., Badejoko, W., Bittner-Eddy, P., Boore, J.L., Chibucos, M.C., Coates, M., Dehal, P., Delehaunty, K., Dong, S., Downton, P., Dumas, B., Fabro, G., Fronick, C., Fuerstenberg, S.I., Fulton, L., Gaulin, E., Govers, F., Hughes, L., Humphray, S., Jiang, R.H.Y., Judelson, H., Kamoun, S., Kyung, K., Meijer, H., Minx, P., Morris, P., Nelson, J., Phuntumart, V., Qutob, D., Rehmany, A., Rougon-Cardoso, A., Ryden, P., Torto-Alalibo, T., Studholme, D., Wang, Y., Win, J., Wood, J., Clifton, S.W., Rogers, J., Van den Ackerveken, G., Jones, J.D.G., McDowell, J.M., Beynon, J., and Tyler, B.M. 2010.

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science, 330:1549-1551.

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David J Studholme, Eric Kemen, Daniel MacLean, Sebastian Schornack, Valente Aritua, Richard Thwaites, Murray Grant, Julian Smith, and Jonathan DG Jones. (2010)

Genome-wide sequencing data reveals virulence factors implicated in banana xanthomonas wilt. FEMS Microbiology Letters, 310(2):182–192.

Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JD. (2010)

Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10302-7. Epub 2010 May 17. PubMed PMID: 20479233; PubMed Central PMCID: PMC2890483.

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. (2010)

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 3;465(7298):627-31. Epub 2010 Mar 24. PubMed PMID: 20336072.

Lacombe S, Rougon-Cardoso A, Sherwood E, Peeters N, Dahlbeck D, van Esse HP, Smoker M, Rallapalli G, Thomma BPHJ, Staskawicz B, Jones JDG and Zipfel C (2010)

Inter-family transfer of a plant pattern recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 4 :365-369.

Chakrabarti A, Panter SN, Harrison K, Jones JD, Jones DA. (2009)

Regions of the Cf-9B disease resistance protein able to cause spontaneous necrosis in Nicotiana benthamiana lie within the region controlling pathogen recognition in tomato. Mol Plant Microbe Interact. 2009 Oct;22(10):1214-26. PubMed PMID: 19737095.

Wulff BB, Heese A, Tomlinson-Buhot L, Jones DA, de la Peña M, Jones JD. (2009)

The major specificity-determining amino acids of the tomato Cf-9 disease resistance protein are at hypervariable solvent-exposed positions in the central leucine-rich repeats. Mol Plant Microbe Interact. 2009 Oct;22(10):1203-13. PubMed PMID: 19737094.

Nekrasov V, Li J, Batoux M, Roux M, Lacombe S, Rougon A, Chu ZH, Bittel P, Kiss-Papp M, Chinchilla D, van Esse HP, Jorda L, Schwessinger B, Nicaise V, Thomma BPHJ, Molina A, Jones JDG and Zipfel C (2009)

Control of the pattern recognition receptor EFR by an ER protein complex in plant immunity. EMBO Journal 28: 3428-3438.

Li J, Chu ZH, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C and Jones JDG (2009)

A dedicated subset of ER quality control components required for plant innate immunity. Proc. Natl. Acad. Sci. USA 106: 15973-15978.

Li J, Zhao-Hui C, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C, Jones JD. (2009)

Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR. Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15973-8. Epub 2009 Aug 26. PubMed PMID: 19717464; PubMed Central PMCID: PMC2747228.

Haas, B.J., Kamoun, S., Zody, M.C., Jiang, R.H.Y., Handsaker, R.E., Cano, L.M., Grabherr, M., Kodira, C.D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T.O., Ah-Fong, A.M.V., Alvarado, L., Anderson, V.L., Armstrong, M.R., Avrova, A., Baxter, L., Beynon, J., Boevink, P.C., Bollmann, S.R., Bos, J.I.B., Bulone, V., Cai, G., Cakir, C., Carrington, J.C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M.A., Fugelstad, J., Gilroy, E.M., Gnerre, S., Green, P.J., Grenville-Briggs, L.J., Griffith, J., Grunwald, N.J., Horn, K., Horner, N.R., Hu, C.-H., Huitema, E., Jeong, D.-H., Jones, A.M.E., Jones, J.D.G., Jones, R.W., Karlsson, E.K., Kunjeti, S.G., Lamour, K., Liu, Z., Ma, L., MacLean, D., Chibucos, M.C., McDonald, H., McWalters, J., Meijer, H.J.G., Morgan, W., Morris, P.F., Munro, C.A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D.C., Schumann, U.D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D.J., Sykes, S., Thines, M., van de Vondervoort, P.J.I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B.C., van West, P., Ristaino, J., Govers, F., Birch, P.R.J., Whisson, S.C., Judelson, H.S., and Nusbaum, C. 2009.

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393-398.

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Pel MA, Foster SJ, Park TH, Rietman H, van Arkel G, Jones JDG, van Eck HJ, Jacobsen E, Visser RGF, van der Vossen EAG (2009)

Mapping and cloning of late blight resistance genes from Solanum venturii using an interspecific candidate gene approach. Molecular Plant-Microbe Interactions 22:601-615.

Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA. (2009)

A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact. 2009 Jan;22(1):52-62. PubMed PMID: 19061402.

Thines M, Choi YJ, Kemen E, Ploch S, Holub EB, Shin HD, Jones JD. (2009)

A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae). Persoonia. 2009 Jun;22:123-8. Epub 2009 May 26. PubMed PMID: 20198144; PubMed Central PMCID: PMC2789544.

Hofius D, Schultz-Larsen T, Joensen J, Tsitsigiannis DI, Petersen NH, Mattsson O, Jørgensen LB, Jones JD, Mundy J, Petersen M. (2009)

Autophagic components contribute to hypersensitive cell death in Arabidopsis. Cell. 2009 May 15;137(4):773-83. PubMed PMID: 19450522.

Grant MR, Jones JD. (2009)

Hormone (dis)harmony moulds plant health and disease. Science. 2009 May 8;324(5928):750-2. PubMed PMID: 19423816.

Foster SJ, Park TH, Pel M, Brigneti G, Sliwka J, Jagger L, can der Vossen E, Jones JDG (2009)

Rpi-vnt1.1, a TM-22 homology from Solanum venturii, confers resistance to potato late blight. Molecular Plant-Microbe Interactions 22:589-600.

Bari R, Jones JD. (2009)

Role of plant hormones in plant defence responses. Plant Mol Biol. 2009 Mar;69(4):473-88. Epub 2008 Dec 16. Review. PubMed PMID: 19083153.

Sohn KH, Zhang Y, Jones JD. (2009)

The Pseudomonas syringae effector protein, AvrRPS4, requires in planta processing and the KRVY domain to function. Plant J. 2009 Mar;57(6):1079-91. Epub 2009 Jan 17. PubMed PMID: 19054367.

Swiderski MR, Birker D, Jones JD. (2009)

The TIR domain of TIR-NB-LRR resistance proteins is a signaling domain involved in cell death induction. Mol Plant Microbe Interact. 2009 Feb;22(2):157-65. PubMed PMID: 19132868.

Daniel MacLean, Jonathan DG Jones, and David J Studholme. (2009)

Application of ’next-generation’ sequencing technologies to microbial genetics. Nature Reviews Microbiology, 7(4):287–296

Park TH, Foster S, Brigneti G, Jones JDG (2009)

Two distinct potato late blight resistance genes from Solanum berthaultii are located on chromosome 10. Euphytica 165:269-278.

Tedman-Jones JD, Lei R, Jay F, Fabro G, Li X, Reiter WD, Brearley C, Jones JD. (2008)

Characterization of Arabidopsis mur3 mutations that result in constitutive activation of defence in petioles, but not leaves. Plant J. 2008 Dec;56(5):691-703. Epub 2008 Jul 23. PubMed PMID: 18657237.

Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque MP, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones JD, Taylor CG, Schachtman DP, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze L, Bennett MJ. (2008)

The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol. 2008 Aug;10(8):946-54. Epub 2008 Jul 11. PubMed PMID: 18622388.

Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K, Liu CM, Woods-Tör A, Zipfel C, de Wit PJ, Jones JD, Tör M, Thomma BP. (2008)

A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis. Plant Physiology 147(2): 503-17.

Navarro L, Bari R, Achard P, Lisón P, Nemri A, Harberd NP, Jones JD. (2008)

DELLAs control plant immune responses by modulating the balance of jasmonic acid and salicylic acid signaling. Curr Biol. 2008 May 6;18(9):650-5. PubMed PMID: 18450451.

Zipfel C, Schwessinger B, Roux, M and Jones JDG (2008)

Genetic analysis of PAMP-triggered immunity in Arabidopsis. In: Lorito, M, Woo, SL and Scala, F (ed). International Society for Molecular Plant-Microbe Interactions, St. Paul, Minnesota. Biology of Plant-Microbe Interactions, 6.

Harrold A van den Burg, Dimitrios I Tsitsigiannis, Owen Rowland, Jane Lo, Ghanasyam Rallapalli, Daniel MacLean, Frank LW Takken, and Jonathan DG Jones. (2008)

The f-box protein acre189/acif1 regulates cell death and defense responses activated during pathogen recognition in tobacco and tomato. The Plant Cell Online, 20(3):697–719

Greenshields DL, Jones JD. (2008)

Plant pathogen effectors: getting mixed messages. Curr Biol. 2008 Feb 12;18(3):R128-30. PubMed PMID: 18269910.

Sorokin AP, Walsh S, Baumann K, Nichols J, Bevan M, Jones JD, Martin C, Clarke JH. (2008)

Induction of phenotypic variation by activation of genes harbouring a maize Spm element in their promoter regions using a TnpA-VP16 fusion protein. Plant J. 2008 Feb;53(3):587-94. Epub 2007 Dec 6. PubMed PMID: 18069940.

Sohn KH, Lei R, Nemri A, Jones JD. (2007)

The downy mildew effector proteins ATR1 and ATR13 promote disease susceptibility in Arabidopsis thaliana. Plant Cell. 2007 Dec;19(12):4077-90. PubMed PMID: 18165328; PubMed Central PMCID: PMC2217653.

Wirthmueller L, Zhang Y, Jones JD, Parker JE. (2007)

Nuclear accumulation of the Arabidopsis immune receptor RPS4 is necessary for triggering EDS1-dependent defense. Curr Biol. 2007 Dec 4;17(23):2023-9. PubMed PMID: 17997306.

Nemri A, Neff MM, Burrell M, Jones JD, Studholme DJ. (2007)

Marker development for the genetic study of natural variation in Arabidopsis thaliana. Bioinformatics. Nov 15;23(22):3108-9. PubMed PMID: 18025007.

Thomas CM, Jones JD. (2007)

Molecular analysis of Agrobacterium T-DNA integration in tomato reveals a role for left border sequence homology in most integration events. Mol Genet Genomics. Oct;278(4):411-20. Epub 2007 Jun 16. PubMed PMID: 17574477.

Robert-Seilaniantz A, Navarro L, Bari R, Jones JD. (2007)

Pathological hormone imbalances. Curr Opin Plant Biol. 2007 Aug;10(4):372-9. Review. PubMed PMID: 17646123.

Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. (2007)

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A. Jul 17;104(29):12057-62. Epub 2007 Jul 12. PubMed PMID: 17626786; PubMed Central PMCID: PMC1914337.

Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nürnberger T, Jones JDG, Felix G and Boller T (2007)

A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature, 448: 497-500.

Hofius D, Tsitsigiannis DI, Jones JD, Mundy J. (2007)

Inducible cell death in plant immunity. Semin Cancer Biol. Apr;17(2):166-87. Epub 2006 Dec 12. PubMed PMID: 17218111.

Jones, JDG and Dangl, JL.(2006)

The plant immune system. Nature. 444:323-9.

Chris Ridout, P. Skamnioti, O Porritt, S Sacristan, J. D.G. Jones & J K.M. Brown (2006)

Multiple Avirulence Gene Paralogues in the Cereal Powdery Mildew Fungi. Plant Cell 2006, 18:2402-14.

Nomura ,K, DebRoy, S, Lee, YH Pumplin, N Jones, JDG, He, SH (2006)

A Bacterial Virulence Protein Suppresses Host Innate Immunity to Cause Plant Disease. Science 313:220-3

L. Michael Weaver, Michal R. Swiderski, Yan Li and Jonathan D. G. Jones (2006)

The Arabidopsis thaliana TIR-NB-LRR R protein, RPP1A; protein localization and constitutive activation of defence by truncated alleles in tobacco and Arabidopsis. Plant Journal 47:829-840

Vladimir Nekrasov, Andrea A. Ludwig, Jonathan D.G. Jones (2006

CITRX thioredoxin is a putative adaptor protein connecting Cf-9 and the ACIK1 protein kinase during the Cf-9/Avr9- induced defence response. FEBS Letters 580(17):4236-41

Miguel Angel Torres, J.D.G. Jones, and J Dangl (2006)

Reactive Oxygen Species Signaling in Response to Pathogens Plant Physiol. 141 373-378

Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones JDG, Boller T and Felix G (2006)

Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell, 125: 749-760.

Lionel Navarro, Patrice Dunoyer, Benedict Arnold, Nihal Dharmasiri, Mark Estelle, Olivier Voinnet & Jonathan D.G. Jones. (2006)

A Plant MicroRNA Confers Bacterial Disease Resistance By Repressing Auxin Signaling Science. 312 436-439

Barker, CL, Baillie, BK, Hammond-Kosack, KE, Jones, JDG, Jones, DA. (2006)

Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal 46(3) 385-399

Barker, CL, Talbot, SJ, Jones, JDG, Jones, DA. (2006)

A tomato mutant that shows stunting, wilting, progressive necrosis and constitutive expression of defence genes contains a recombinant Hcr9 gene encoding an autoactive protein. The Plant Journal, 46(3) 369-384

Rocío González-Lamothe, Dimitrios I. Tsitsigiannis, Andrea A. Ludwig, Mireia Panicot, Ken Shirasu and Jonathan DG Jones (2006)

The U-box Protein CMPG1 is Required for Efficient Activation of Defense Mechanisms Triggered by Multiple Resistance Genes in Tobacco and Tomato Plant Cell, 18:1067-1083.

Yamamizo, C., Kuchimura, K., Kobayashi, A., Katou, S., Kawakita, K., Jones, J. D. G., Doke, N., Yoshioka, H., (2006)

Rewiring mitogen-activated protein kinase cascade by positive feedback confers potato blight resistance. Plant Physiology 140 (2) 681-692.

Cheng-Wei Yang, Rocio Gonzalez-Lamothe, Richard A. Ewan, Owen Rowland, Hirofumi Yoshioka, Heng Ye, Elizabeth O’ Donnell, Jonathan DG Jones, Ari Sadanandom (2006)

The U-box protein AtPUB17 is a functional ortholog of NtACRE276 and its E3 ubiquitin ligase activity is required for cell death and defence Plant Cell 18:1084-1098

Katou, S, Yoshioka, H, Kawakita, K, Rowland, O, Jones, J. D. G, Mori, H, Doke, N. (2005)

Involvement of PPS3 phosphorylated by elicitor-responsive mitogen-activated protein kinases in the regulation of plant cell death. Plant Physiology 139(4) 1914-1926

Smilde WD, Brigneti G, Jagger L, Perkins S and Jones JDG (2005)

Solanum mochiquense chromosome IX carries a novel late blight resistance gene Rpi-moc1 Theor. Appl. Genetics 110: 252-8.

Torres MA, Jones JD, Dangl JL. (2005)

Pathogen-induced, NADPH oxidase-derived reactive oxygen intermediates suppress spread of cell death in Arabidopsis thaliana. Nat Genet. 37:1130-4.

Heese-Peck A, Ludwig AA, and Jonathan D. G. Jones (2005)

Rapid Phosphorylation of a Syntaxin during the Avr9/Cf-9-Race-Specific Signalling Pathway Plant Phys 138: 2406-2416.

Fritz-Laylin LK, Krishnamurthy N, Tö, Sjöder KV, and Jones JDG (2005)

Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis Plant Phys 138: 611-623.

Ludwig AA, Saitoh H, Felix G, Freymark G, Miersch O, Wasternack C, Boller T, Jones JDG, and Romeis T (2005)

Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants PNAS 102 10736-10741.

Rooney HCE, van Klooster JW, van der Hoorn RAL, Joosten MAHJ, Jones JDG, and de Wit PJGM (2005)

Cladosporium Avr2 Inhibits Tomato Rcr3 Protease Required for Cf-2-Dependent Disease Resistance Science 308: 1783-6.

van der Hoorn RA, Wulff BB, Rivas S, Durrant MC, van der Ploeg A, de Wit PJ, Jones JD. (2005)

Structure-function analysis of Cf-9, a receptor-like protein with extracytoplasmic leucine-rich repeats. Plant Cell. 17:1000-15.

Montoya, T., Nomura, T., Farrar, K., Kaneta, T.,Yokota, T., Harrison, K., Jones, J. D. G., Kamiya, Y. and Bishop, G.J. (2005)

Patterns of Dwarf expression and brassinosteroid accumulation in tomato reveal the importance of brassinosteroid synthesis during fruit development, Plant Journal 42, 262.269.

Rowland O, Ludwig AA, Merrick CJ, Baillieul F, Tracy FE, Durrant WE, Fritz-Laylin L, Nekrasov V, Sjolander K, Yoshioka H, Jones JD (2005)

Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9-Dependent Disease Resistance in Tomato. Plant Cell. 17:295-310.

Wulff BB, Kruijt M, Collins PL, Thomas CM, Ludwig AA, De Wit PJ, Jones JDG. (2004)

Gene shuffling-generated and natural variants of the tomato resistance gene Cf-9 exhibit different auto-necrosis-inducing activities in Nicotiana species. Plant J. Dec;40(6):942-56.

Reyes, M. E. C, Matthew, L., Wang, J., Bishop, G. J., Klimyuk, V., Jones, J. D. G., and Carroll, B.J. (2004)

Ac Transposase Induces Methylation of a Ds Transposon in Transgenic Tomato Journal of Genome Science and Technology 3, 27-29.

Tö, Brown D, Cooper A, Woods-Tö, Sjöder K, Jones JDG and Holub EB (2004)

Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLV2 and tomato Cf-9. Plant Phys 135:1100-1112.

van der Hoorn RA, Jones JD. (2004)

The plant proteolytic machinery and its role in defence. Curr Opin Plant Biol. Aug;7(4):400-7.

Zhang Y, Dorey S, Swiderski M, Jones JDG. (2004)

Expression of RPS4 in tobacco induces an AvrRps4-independent HR that requires EDS1, SGT1 and HSP90. Plant J. Oct;40(2):213-24.

Rivas S, Rougon-Cardoso A, Smoker M, Schauser L, Yoshioka H, Jones JDG. (2004)

CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence. EMBO Journal, 23(10): 2156-2165

Brigneti G, MartíHernáez AM, Jin H, Chen J, Baker B, Baulcombe DC and Jones JDG (2004)

Virus-Induced Gene Silencing in Solanum Species Plant Journal 39:264-272.

Zipfel C, Robatzek S, Navarro L, Oakeley E, Jones JDG, Felix G and Boller T (2004).

Bacterial disease resistance through flagellin perception in Arabidopsis. Nature, 428: 764-767.

Wulff BBH, Thomas CM, Parniske M and Jones JDG (2004)

Genetic variation at the tomato Cf-4/Cf-9 locus induced by EMS mutagenesis and intra-locus recombination. Genetics . 167: 459-470.

Kwak, JM, Mori, IC, Pei, Z-M, Leonhardt, N., Torres, MA, Dangl, JL, Bloom, R., Bodde, S., Jones JDG., Schroeder, JI (2003)

NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signalling in Arabidopsis EMBO J. 2003 Jun 2;22(11):2623-33.

Foreman J, Demidchik V, Bothwell JHF, Miedema H, Mylona P, Torres MA, Linstead P, Brownlee C, Jones JDG, Davies J and Dolan L (2003)

Reactive oxygen species produced by NADPH oxidase regulate plant cell growth Nature 422 442-6

van der Hoorn R.A.L, Rivas R, Wulff BBH, Jones JDG, and Joosten MAHJ,. (2003)

Rapid migration in gel filtration of the Cf-4 and Cf-9 resistance proteins is an intrinsic property of Cf proteins and not due to their association with high molecular weight proteins. Plant J. 2003 Aug;35(3):305-15.

Yoshioka H, Numata N, Nakajima K, Katou S, Kawakita K, Rowland, O, J. D. G. Jones, and N Doke (2003)

Nicotiana benthamiana gp91phox Homologs NbrbohA and NbrbohB Participate in H2O2 Accumulation and Resistance to Phytophthora infestans Plant Cell 15: 706-718.

Gidoni D., Fuss E., Burbidge A., Speckmann G. J., James S., Nijkamp D., Mett A., Feiler J., Smoker M., de Vroomen M. J., Leader D., Liharska T., Coppoolse E., Levin I., de Both M., Schuch W., Jones J. D. G., Taylor I. B. (2003)

Multi-functional T-DNA/Ds tomato lines designed for gene cloning and molecular and physical dissection of the tomato genome. Plant Molecular Biology 51 83-98

Muskett, P., Kahn, K.,Austin, M.J., Moisan, L.J., Sadanandom, A., Shirasu, K., Jones, J.D.G., Parker, J.E (2002)

Arabidopsis RAR1 exerts rate-limiting control of R gene-mediated defences against multiple pathogens Plant Cell 14 979-992.

Peart JR, Lu R, Sadanandom A, Malcuit I, Moffett P, Brice DC, Schauser L, Jaggard DA, Xiao S, Coleman MJ, Dow M, Jones JDG, Shirasu K, Baulcombe DC. (2002)

Ubiquitin ligase-associated protein SGT1 is required for host and nonhost disease resistance in plants. Proc Natl Acad Sci U S A. ;99:10865-9.

Rivas, S., Mucyn T, van den Burg, H.A., Vervoort, J. and Jones, J.D.G. (2002)

A ~400 kDa membrane-associated complex that contains one molecule of the resistance protein Cf-4. Plant Journal 29 783-796.

Kruger J., Thomas C. M., Golstein C., Dixon M. S., Smoker M., Tang S., Mulder L., Jones J. D. G.(2002)

A tomato cysteine protease required for cf-2- dependent disease resistance and supression of autonecrosis. Science 296 744-747

Austin, M.J., Muskett, P., Kahn, K., Jones, J.D.G., Parker, J.E (2002)

Regulatory Role of SGT1 in Early R Gene-Mediated Plant Defenses. Science 295 2077-2080.

Rivas, S., Romeis, T., Jones, J.D.G. (2002)

The Cf-9 disease resistance protein is present in a ~420 kDa heteromultimeric membrane-associated complex at one molecule per complex. Plant Cell 14: 689-702.

Jones J D.G (2002)

From physics and chemistry to plant biology. Plant Physiol. 2002 Feb;128(2):332-3.

Torres, M.A. Dangl, J. L., and Jones, J. D. G. (2002)

Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response Proc.Natl.Acad.Sci.USA 99 517-522.

van der Biezen E.A., Freddie C.T. Kahn K., Parker J.E. Jones J.D.G. (2002)

Arabidopsis RPP4 is a Member of the RPP5 Multigene Family of TIR-NB-LRR genes and Confers Downy Mildew Resistance Through Multiple Signaling Components. Plant Journal 29 439-451.

Romeis T, Ludwig A, Martin R, and Jones JDG (2001)

Calcium-Dependent Protein Kinases Play an Essential Role in a Plant Defence Response EMBO J 20 5556-5567.

Wulff B. B. H., Thomas C. M., Smoker M., Grant M., Jones J. D. G.(2001)

Domain swapping and gene shuffling identify sequences required for induction of an Avr-dependent hypersensitive response by the tomato Cf-4 and Cf-9 proteins. Plant Cell 13 255-272

Dangl, J. L., and Jones, J. D. G. (2001)

Plant pathogens and integrated defence responses to infection. Nature 411, 826-833.

Luderer, R., Rivas, S., Nurnberger, T., Mattei, B., Van den Hooven, H. W., Van der Hoorn, R. A. L., Romeis, T., Wehrfritz, J. M., Blume, B., Nennstiel, D., Zuidema, D., Vervoort, J., De Lorenzo, G., Jones, J. D. G., De Wit, P., and Joosten, M. (2001)

No evidence for binding between resistance gene product Cf-9 of tomato and avirulence gene product AVR9 of Cladosporium fulvum. Molecular Plant-Microbe Interactions 14, 867-876.

Jones, J. D. G. (2001)

Putting knowledge of plant disease resistance genes to work. Current Opinion in Plant Biology 4, 281-287.

Jin H, Cominelli E, Bailey P, Parr A, Mehrtens F, Jones JDG, Tonelli C, Weisshaar B, Martin C. (2000)

Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J. 2000 Nov 15;19(22):6150-61.

Dixon, M. S., Golstein, C., Thomas, C. M., van der Biezen, E. A., and Jones, J. D. G. (2000)

Genetic complexity of pathogen perception by plants: The example of Rcr3, a tomato gene required specifically by Cf-2. Proc Nat Acad Sci USA 97, 8807-8813.

Durrant, W., Rowland, O., Piedras, P., and Jones, J. D. G. (2000)

cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12, 963- 977.

Romeis, T., Piedras, P., and Jones, J. D. G. (2000)

Resistance gene-dependent activation of a calcium-dependent protein kinase (CDPK) in the plant defence response. Plant Cell 12, 803-815.

Brading, P. A., Hammond-Kosack, K. E., Parr, A., and Jones, J. D. G. (2000)

Salicylic acid is not required for Cf-2- and Cf-9-dependent resistance of tomato to Cladosporium fulvum. Plant Journal 23, 305-318.

Piedras, P., Rivas, S., Droge, S., Hillmer, S., and Jones, J. D. G. (2000)

Functional, c-myc-tagged Cf-9 resistance gene products are plasma membrane localised and glycosylated. The Plant Journal 21, 529-536.

Van der Biezen, E. A., Sun, J., Coleman, M. J., Bibb, M. J., and Jones, J. D. G. (2000)

Arabidopsis RelA/SpoT homologs implicat (p)ppGpp in plant signalling. Proc.Natl.Acad.Sci.USA 97. 3747- 3752.

Tissier, A. F., Marillonnet, S., Klimyuk, V., Patel, K., Torres, M. A., Murphy, G., and Jones, J. D. G. (1999)

Multiple independent defective Suppressor-mutator transposon insertions in Arabidopsis: A tool for functional genomics. Plant Cell 11, 1841-1852.

Takken, F.L.W, C.M. Thomas, M.H.A.J. Joosten, C. Golstein, N. Westerink, J. Hille, H.J.J., Nijkamp, P.J.G.M De Wit and J.D.G Jones (1999)

A second gene at the tomato Cf-4 locus confers resistance to Cladosporium fulvum through recognition of a novel avirulence determinant. Plant Journal 20 279-288.

Noel, L., Moores,T.L., van der Biezen, E.A., Parniske, M., Daniels, M.J., Parker, J.E., Jones, J.D.G. (1999)

Pronounced Intraspecific Haplotype Divergence at the RPP5 Complex Disease Resistance Locus in Arabidopsis. Plant Cell 11, 2099-2012.

Parniske, M., and Jones, J. D. G. (1999)

Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family. Proc Nat Acad Sci USA 96, 5850-5855

Falk, A., Feys, B. J., Frost, L. N., Jones, J. D. G., Daniels, M. J., and Parker, J. E. (1999)

EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases. .. Proc Nat Acad Sci USA 96, 3292-3297.

Romeis, T., Pedro Piedras, Shuqun Zhang, Daniel F. Klessig, Heribert Hirt, and Jonathan D. G. Jones (1999)

Rapid Avr 9- and Cf-9 .Dependent Activation of MAP Kinases in Tobacco Cell Cultures and Leaves: Convergence of Resistance Gene, Elicitor, Wound, and Salicylate Responses The Plant Cell 11: 273-288.

Parniske, M., Wulff, B. B. H., Bonnema, G., Thomas, C. M., Jones, D. A., and Jones, J. D. G. (1999)

Homologues of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1. Molecular Plant-Microbe Interactions 12, 93-102.

Van der Biezen, E. A., and Jones, J. D. G. (1998)

Plant disease-resistance proteins and the gene-for-gene concept. Trends in Biochemical Sciences 23, 454-456.

Botella, M. A., Parker, J. E., Frost, L. N., Bittner-Eddy, P. D., Beynon, J. L., Daniels, M. J., Holub, E. B., and Jones, J. D. G. (1998)

Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. The Plant Cell 10, 1847-1860

Van der Biezen, E. A., and Jones, J. D. G. (1998)

The NB-ARC domain: A novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Current Biology 8, R226-R22

Torres, M. A., Onouchi, H., Hamada, S., Machida, C., Hammond-Kosack, K. E. and Jones, J. D. G. (1998)

Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox) Plant Journal 14 365-370

Piedras, P., Hammond Kosack, K. E., Harrison, K., and Jones, J. D. G. (1998)

Rapid, Cf-9- and Avr9-dependent production of active oxygen species in tobacco suspension cultures. Molecular Plant-Microbe Interactions 11, 1155-1166.

Hammond-Kosack, K. E., Tang, S. J., Harrison, K., and Jones, J. D. G. (1998)

The tomato Cf-9 disease resistance gene functions in tobacco and potato to confer responsiveness to the fungal avirulence gene product Avr9. The Plant Cell 10, 1251-1266.

Keddie, J. S., Carroll, B. J., Thomas, C. M., Reyes, M. E. C., Klimyuk, V., Holtan, H., Gruissem, W., and Jones, J. D. G. (1998)

Transposon tagging of the Defective embryo and meristems gene of tomato. The Plant Cell 10, 877-887.

English, J. J., and J. D. G. Jones, (1998)

Epigenetic instability and trans- silencing interactions associated with an SPT::Ac T-DNA locus in tobacco: Genetics 148, 457-469

Thomas, C. M., D. A. Jones, M. Parniske, K. Harrison, P. Balint-Kurti, K. Hatzixanthis, and J. D. G. Jones, (1997)

Characterization of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies a domain which determines recognitional specificity in Cf-4 and Cf-9: The Plant Cell 9, 2209-2224.

Parniske, M., K. E. Hammond-Kosack, C. Golstein, C. M. Thomas, K. Harrison, B. B. H. Wulff, and J. D. G. Jones ,(1997)

Novel Disease Resistance Specificities Result From Sequence Exchange Between Tandemly Repeated Genes At The Cf-4/9 Locus Of Tomato: Cell 91, 821-832.

Parker, J. E., M. J. Coleman, V. Szabo, L. N. Frost, R. Schmidt, E. A. van der Biezen, T. Moores, C. Dean, M. J. Daniels, and J. D. G. Jones, (1997)

The Arabidopsis Downy Mildew Resistance Gene RPP5 Shares Similarity to the Toll and Interleukin-1 Receptors with N and L6.: The Plant Cell, v. 9, p. 879-894

Klimyuk, V. I. and J. D. G. Jones, (1997)

AtDMC1, the Arabidopsis homolog of the yeast DMC1 gene: characterization, transposon-induced allelic variation and meiosis-associated expression: The Plant Journal, 11, p. 1-14.

Jones, DA and Jones, JDG (1997)

The roles of leucine-rich repeat proteins in plant defences. Advances in Botanical Research incorporating Advances in Plant Pathology. 24 89 . 167

Hammond-Kosack, K. E. and J. D G Jones, (1997)

Plant Disease Resistance Genes: Ann. Rev. Plant Physiol. Plant Mol. Biol., v. 48, p. 575-607.

Hammond-Kosack, K. E., and J. D. G. Jones, (1996)

Resistance gene-dependent plant defense responses.: The Plant Cell, 8, p. 1773-1791.

Bishop, G, Harrison, K and Jones, JDG (1996)

The tomato dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family. The Plant Cell 8 959-969

Keddie, JS, Carroll, B, Jones, JDG and Gruissem, W (1996)

The DCL gene of tomato is required for chloroplast development and palisade cell morphogenesis in leaves. EMBO J. 15 4208 . 4217

Dixon, MS, Jones, DA, Keddie, JS, Thomas, CM, Harrison, K and Jones, JDG (1996)

The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84,451-459.

Hammond-Kosack, KE, Silverman, P, Raskin, I and Jones, JDG (1996)

Race-specific elicitors of Cladosporium fulvum induce changes in cell morphology and the synthesis of ethylene and salicylic acid in tomato plants carrying the corresponding Cf disease resistance genes. Plant Physiol. 110,1381-1394.

May, MJ, Hammond-Kosack, KE and Jones, JDG (1996)

Involvement of reactive oxygen species, glutathione metabolism, and lipid peroxidation in the Cf-gene-dependent defense response of tomato cotyledons induced by race-specific elicitors of Cladosporium fulvum. Plant Physiol. 110,1367-1379.

Staskawicz, BJ, Ausubel, FM, Baker, BJ, Ellis, JG and Jones, JDG (1995)

Molecular genetics of plant disease resistance. Science 268,661-667.

English, JJ, Harrison, K and Jones, JDG (1995)

Aberrant transpositions of maize double Ds-like elements involve Ds on sister chromatids. The Plant Cell 7, 1235 – 1247

Sundaresan, V, Springer, P, Volpe, T, et al (1995)

Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9,1797-1810.

Hammond-Kosack, KE, Harrison, K and Jones, JDG (1994)

Developmentally regulated cell death on expression of the fungal avirulence gene Avr9 in tomato seedlings carrying the disease resistance gene Cf-9. Proc Nat Acad Sci USA 91,10445-10449.

Hammond-Kosack, KE, Jones, DA and Jones, JDG (1994)

Identification of two genes required in tomato for full Cf-9-dependent resistance to Cladosporium fulvum. The Plant Cell 6,361-374.

Hammond-Kosack, K. E. and J. D. G. Jones (1994)

Incomplete dominance of tomato Cf genes for resistance to Cladosporium fulvum . Molecular Plant-Microbe Interactions. 7: 58-70.

Jones, DA, Thomas, CM, Hammond-Kosack, KE, Balint-Kurti, PJ and Jones, JDG (1994)

Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science (Wash.). 266,789-793.

Scofield, SR, English, JJ and Jones, JDG (1993)

High level expression of the Activator transposase gene inhibits the excision of Dissociation in tobacco cotyledons. Cell 75,507-517.

Dickinson, M. J., D. A. Jones, et al. (1993)

Close Linkage Between the Cf-2/Cf-5 and Mi Resistance Loci in Tomato.. Molecular Plant-Microbe Interactions 6(3): 341-347.

Bancroft, I, Jones, JDG and Dean, C (1993)

Heterologous transposon tagging of the DRL1 locus in Arabiodopsis. . The Plant Cell 5,631-638.

English, JJ, Harrison, KA and Jones, JDG (1993)

A genetic analysis of DNA sequence requirements for Dissociation State I activity in tobacco. The Plant Cell 5,501-514.

Jones, J. D. G., L. Shlumukov, et al. (1992)

Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants.. Transgenic Research 1: 285-297.

Scofield, S., K. A. Harrison, S. J. Nurrish, and J. D. G. Jones, (1992)

Promoter fusions to the Ac transposase gene confer distinct patterns of Ds somatic and germinal excision in tobacco: The Plant Cell, 4, p. 573-582.

Jones, J. D. G., F. C. Carland, E. Lim, E. Ralston, and H. K. Dooner, (1990)

Preferential transposition of the maize element Activator to linked chromosomal locations in tobacco: The Plant Cell, 2, p. 701-707.

Dean, C., J.D.G. Jones, et al. (1988)

Influence of flanking sequences on variability in expression levels of an introduced gene in transgenic tobacco plants.. Nucleic Acids Research 16: 9267-9284.