Publications
2012
KH Sohn, SB Saucet, CR Clarke, BA Vinatzer, H O’Brien3, DS Guttman3 and JDG Jones HopAS1 recognition significantly contributes to Arabidopsis non-host resistance to Pseudomonas syringae pathogens (2012 ) New Phytologist 2012 Jan;193(1):58-66
2011
Robert-Seilaniantz A, Maclean D, Jikumaru Y, Hill L, Yamaguchi S, Kamiya Y,
Jones JD. The microRNA miR393 redirects secondary metabolite biosynthesis away
from camalexin and towards glucosinolates. Plant J. 2011 Apr 1. doi:
10.1111/j.1365-313X.2011.04591.x. [Epub ahead of print] PubMed PMID: 21457368.
Bailey K, Cevik V, Holton NJ, Byrne-Richardson J, Sohn KH, Coates M, Woods-Tör
A, Aksoy HM, Hughes L, Baxter L, Jones JD, Beynon J, Holub EB, Tör M. Molecular
cloning of ATR5Emoy2 from Hyaloperonospora arabidopsidis, an avirulence
determinant that triggers RPP5-mediated defense in Arabidopsis. Mol Plant Microbe
Interact. 2011 Mar 1. [Epub ahead of print] PubMed PMID: 21361788.
Jones JD. Why genetically modified crops? Philos Transact A Math Phys Eng Sci.
2011 May 13;369(1942):1807-16. PubMed PMID: 21464072.
G. Fabro, J. Steinbrenner, M. Coates, N. Ishaque, L. Baxter, D.J. Studholme E. Körner, R.L. Allen, S.J.M. Piquerez, A. Rougon-Cardoso, D. Greenshields, R. Lei, Jorge L. Badel, M.-C. Caillaud, K.-H. Sohn, G.Van den Ackerveken, J.E. Parker, J. Beynon and J D. G. Jones. Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. (2011) PLOS Pathogens e1002348
Caillaud MC, Piquerez SJ, Fabro G, Steinbrenner J, Ishaque N, Beynon J, Jones JD. Subcellular localization of the Hpa effector repertoire identifies a tonoplast-associated protein, HaRxL17, that confers enhanced host susceptibility (2011) Plant J. (in press).
Wirthmueller L, Jones JD, Banfield MJ Crystallization and preliminary X-ray diffraction analysis of the RxLR-type effector RxLR3 from the oomycete pathogen Hyaloperonospora arabidopsidis (2011). Acta Crystallogr Sect F Struct Biol Cryst Commun. 67(Pt 11):1417-20.
Grierson CS, Barnes SR, Chase MW, Clarke M, Grierson D, Edwards KJ, Jellis GJ, Jones JD, Knapp S, Oldroyd G, Poppy G, Temple P, Williams R, Bastow R. One hundred important questions facing plant science research (2011) New Phytol. 192(1):6-12.
Robert-Seilaniantz A, Grant M, Jones JD. Hormone crosstalk in plant disease and defense: more than just salicylate/jasmonate antagonism Annu Rev Phytopathol. 2011 49:317-43.
Kemen E, A Gardiner, T Schultz-Larsen, A C. Kemen, A L. Balmuth A Robert-Seilaniantz, K Bailey, E Holub, D J. Studholme, D MacLean, J. D. G. Jones Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana (2011) PLOS Biology vol. 9 (7) pp. e1001094
2010
Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong
A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal
P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI,
Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RH, Judelson H, Kamoun
S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany
A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood
J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JD, McDowell JM, Beynon J,
Tyler BM. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora
arabidopsidis genome. Science. 2010 Dec 10;330(6010):1549-51. PubMed PMID:
21148394.
Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M,
Smith J, Jones JD. Genome-wide sequencing data reveals virulence factors
implicated in banana Xanthomonas wilt. FEMS Microbiol Lett. 2010 Sep
1;310(2):182-92. Epub 2010 Jul 15. PubMed PMID: 20695894.
Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M,
Jones JD. Genome-wide survey of Arabidopsis natural variation in downy mildew
resistance using combined association and linkage mapping. Proc Natl Acad Sci U S
A. 2010 Jun 1;107(22):10302-7. Epub 2010 May 17. PubMed PMID: 20479233; PubMed
Central PMCID: PMC2890483.
Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt
A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B,
Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD,
Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D,
Marjoram P, Borevitz JO, Bergelson J, Nordborg M. Genome-wide association study
of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun
3;465(7298):627-31. Epub 2010 Mar 24. PubMed PMID: 20336072.
Lacombe S, Rougon-Cardoso A, Sherwood E, Peeters N, Dahlbeck D, van Esse HP,
Smoker M, Rallapalli G, Thomma BP, Staskawicz B, Jones JD, Zipfel C. Interfamily
transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial
resistance. Nat Biotechnol. 2010 Apr;28(4):365-9. Epub 2010 Mar 14. PubMed PMID:
20231819.
2009
Thines M, Choi YJ, Kemen E, Ploch S, Holub EB, Shin HD, Jones JD. A newspecies of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary
patterns in white blister rusts (Albuginaceae). Persoonia. 2009 Jun;22:123-8.
Epub 2009 May 26. PubMed PMID: 20198144; PubMed Central PMCID: PMC2789544.
Nekrasov V, Li J, Batoux M, Roux M, Chu ZH, Lacombe S, Rougon A, Bittel P,
Kiss-Papp M, Chinchilla D, van Esse HP, Jorda L, Schwessinger B, Nicaise V,
Thomma BP, Molina A, Jones JD, Zipfel C. Control of the pattern-recognition
receptor EFR by an ER protein complex in plant immunity. EMBO J. 2009 Nov
4;28(21):3428-38. Epub 2009 Sep 17. PubMed PMID: 19763086; PubMed Central PMCID:
PMC2776097.
Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M,
Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L,
Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR,
Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S,
Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ,
Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema
E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu
Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W,
Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L,
Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S,
Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J,
Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S,
Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers
F, Birch PR, Whisson SC, Judelson HS, Nusbaum C. Genome sequence and analysis of
the Irish potato famine pathogen Phytophthora infestans. Nature. 2009 Sep
17;461(7262):393-8. Epub 2009 Sep 9. PubMed PMID: 19741609.
Chakrabarti A, Panter SN, Harrison K, Jones JD, Jones DA. Regions of the Cf-9B
disease resistance protein able to cause spontaneous necrosis in Nicotiana
benthamiana lie within the region controlling pathogen recognition in tomato. Mol
Plant Microbe Interact. 2009 Oct;22(10):1214-26. PubMed PMID: 19737095.
Wulff BB, Heese A, Tomlinson-Buhot L, Jones DA, de la Peña M, Jones JD. The
major specificity-determining amino acids of the tomato Cf-9 disease resistance
protein are at hypervariable solvent-exposed positions in the central
leucine-rich repeats. Mol Plant Microbe Interact. 2009 Oct;22(10):1203-13. PubMed
PMID: 19737094.
Li J, Zhao-Hui C, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C, Jones
JD. Specific ER quality control components required for biogenesis of the plant
innate immune receptor EFR. Proc Natl Acad Sci U S A. 2009 Sep
15;106(37):15973-8. Epub 2009 Aug 26. PubMed PMID: 19717464; PubMed Central
PMCID: PMC2747228.
Hofius D, Schultz-Larsen T, Joensen J, Tsitsigiannis DI, Petersen NH,
Mattsson O, Jørgensen LB, Jones JD, Mundy J, Petersen M. Autophagic components
contribute to hypersensitive cell death in Arabidopsis. Cell. 2009 May
15;137(4):773-83. PubMed PMID: 19450522.
Grant MR, Jones JD. Hormone (dis)harmony moulds plant health and disease.
Science. 2009 May 8;324(5928):750-2. PubMed PMID: 19423816.
Pel MA, Foster SJ, Park TH, Rietman H, van Arkel G, Jones JD, Van Eck HJ,
Jacobsen E, Visser RG, Van der Vossen EA. Mapping and cloning of late blight
resistance genes from Solanum venturii using an interspecific candidate gene
approach. Mol Plant Microbe Interact. 2009 May;22(5):601-15. PubMed PMID:
19348577.
Foster SJ, Park TH, Pel M, Brigneti G, Sliwka J, Jagger L, van der Vossen E,
Jones JD. Rpi-vnt1.1, a Tm-2(2) homolog from Solanum venturii, confers resistance
to potato late blight. Mol Plant Microbe Interact. 2009 May;22(5):589-600. PubMed
PMID: 19348576.
Swiderski MR, Birker D, Jones JD. The TIR domain of TIR-NB-LRR resistance
proteins is a signaling domain involved in cell death induction. Mol Plant
Microbe Interact. 2009 Feb;22(2):157-65. PubMed PMID: 19132868.
Bari R, Jones JD. Role of plant hormones in plant defence responses. Plant
Mol Biol. 2009 Mar;69(4):473-88. Epub 2008 Dec 16. Review. PubMed PMID: 19083153.
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H,
Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD,
Collmer A, Setubal JC, Vinatzer BA. A draft genome sequence of Pseudomonas
syringae pv. tomato T1 reveals a type III effector repertoire significantly
divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe
Interact. 2009 Jan;22(1):52-62. PubMed PMID: 19061402.
Sohn KH, Zhang Y, Jones JD. The Pseudomonas syringae effector protein,
AvrRPS4, requires in planta processing and the KRVY domain to function. Plant J.
2009 Mar;57(6):1079-91. Epub 2009 Jan 17. PubMed PMID: 19054367.
2008
Tedman-Jones JD, Lei R, Jay F, Fabro G, Li X, Reiter WD, Brearley C, Jones
JD. Characterization of Arabidopsis mur3 mutations that result in constitutive
activation of defence in petioles, but not leaves. Plant J. 2008
Dec;56(5):691-703. Epub 2008 Jul 23. PubMed PMID: 18657237.
Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen
E, De Smet I, Vanneste S, Levesque MP, Carrier D, James N, Calvo V, Ljung K,
Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones JD, Taylor CG,
Schachtman DP, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze
L, Bennett MJ. The auxin influx carrier LAX3 promotes lateral root emergence. Nat
Cell Biol. 2008 Aug;10(8):946-54. Epub 2008 Jul 11. PubMed PMID: 18622388.
Navarro L, Bari R, Achard P, Lisón P, Nemri A, Harberd NP, Jones JD. DELLAs
control plant immune responses by modulating the balance of jasmonic acid and
salicylic acid signaling. Curr Biol. 2008 May 6;18(9):650-5. PubMed PMID:
18450451.
Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K,
Liu CM, Woods-Tör A, Zipfel C, de Wit PJ, Jones JD, Tör M, Thomma BP. A
genome-wide functional investigation into the roles of receptor-like proteins in
Arabidopsis. Plant Physiol. 2008 Jun;147(2):503-17. Epub 2008 Apr 23. PubMed
PMID: 18434605; PubMed Central PMCID: PMC2409048.
van den Burg HA, Tsitsigiannis DI, Rowland O, Lo J, Rallapalli G, Maclean D,
Takken FL, Jones JD. The F-box protein ACRE189/ACIF1 regulates cell death and
defense responses activated during pathogen recognition in tobacco and tomato.
Plant Cell. 2008 Mar;20(3):697-719. Epub 2008 Mar 28. PubMed PMID: 18375657;
PubMed Central PMCID: PMC2329923.
Greenshields DL, Jones JD. Plant pathogen effectors: getting mixed messages.
Curr Biol. 2008 Feb 12;18(3):R128-30. PubMed PMID: 18269910.
Sorokin AP, Walsh S, Baumann K, Nichols J, Bevan M, Jones JD, Martin C,
Clarke JH. Induction of phenotypic variation by activation of genes harbouring a
maize Spm element in their promoter regions using a TnpA-VP16 fusion protein.
Plant J. 2008 Feb;53(3):587-94. Epub 2007 Dec 6. PubMed PMID: 18069940.
2007
Sohn KH, Lei R, Nemri A, Jones JD. The downy mildew effector proteins ATR1
and ATR13 promote disease susceptibility in Arabidopsis thaliana. Plant Cell.
2007 Dec;19(12):4077-90. Epub 2007 Dec 28. PubMed PMID: 18165328; PubMed Central
PMCID: PMC2217653.
Nemri A, Neff MM, Burrell M, Jones JD, Studholme DJ. Marker development for
the genetic study of natural variation in Arabidopsis thaliana. Bioinformatics.
2007 Nov 15;23(22):3108-9. PubMed PMID: 18025007.
Wirthmueller L, Zhang Y, Jones JD, Parker JE. Nuclear accumulation of the
Arabidopsis immune receptor RPS4 is necessary for triggering EDS1-dependent
defense. Curr Biol. 2007 Dec 4;17(23):2023-9. Epub 2007 Nov 8. PubMed PMID:
17997306.
Robert-Seilaniantz A, Navarro L, Bari R, Jones JD. Pathological hormone
imbalances. Curr Opin Plant Biol. 2007 Aug;10(4):372-9. Epub 2007 Jul 23. Review.
PubMed PMID: 17646123.
Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H,
Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR.
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc
Natl Acad Sci U S A. 2007 Jul 17;104(29):12057-62. Epub 2007 Jul 12. PubMed PMID:
17626786; PubMed Central PMCID: PMC1914337.
Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nürnberger T, Jones JD,
Felix G, Boller T. A flagellin-induced complex of the receptor FLS2 and BAK1
initiates plant defence. Nature. 2007 Jul 26;448(7152):497-500. Epub 2007 Jul 11.
PubMed PMID: 17625569.
Thomas CM, Jones JD. Molecular analysis of Agrobacterium T-DNA integration in
tomato reveals a role for left border sequence homology in most integration
events. Mol Genet Genomics. 2007 Oct;278(4):411-20. Epub 2007 Jun 16. PubMed
PMID: 17574477.
Hofius D, Tsitsigiannis DI, Jones JD, Mundy J. Inducible cell death in plant
immunity. Semin Cancer Biol. 2007 Apr;17(2):166-87. Epub 2006 Dec 12. PubMed
PMID: 17218111.
2006
Rocío González-Lamothe, Dimitrios I. Tsitsigiannis, Andrea A. Ludwig, Mireia Panicot, Ken Shirasu and Jonathan DG Jones (2006) The U-box Protein CMPG1 is Required for Efficient Activation of Defense Mechanisms Triggered by Multiple Resistance Genes in Tobacco and Tomato Plant Cell, 18:1067-1083.
Cheng-Wei Yang, Rocio Gonzalez-Lamothe, Richard A. Ewan, Owen Rowland, Hirofumi Yoshioka, Heng Ye, Elizabeth O’ Donnell, Jonathan DG Jones, Ari Sadanandom (2006)The U-box protein AtPUB17 is a functional ortholog of NtACRE276 and its E3 ubiquitin ligase activity is required for cell death and defence Plant Cell 18:1084-1098
Lionel Navarro, Patrice Dunoyer, Benedict Arnold, Nihal Dharmasiri, Mark Estelle, Olivier Voinnet & Jonathan D.G. Jones. (2006) A Plant MicroRNA Confers Bacterial Disease Resistance By Repressing Auxin Signaling Science. 312 436-439
Barker, CL, Baillie, BK, Hammond-Kosack, KE, Jones, JDG, Jones, DA. (2006) Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal 46(3) 385-399
Barker, CL, Talbot, SJ, Jones, JDG, Jones, DA. (2006) A tomato mutant that shows stunting, wilting, progressive necrosis and constitutive expression of defence genes contains a recombinant Hcr9 gene encoding an autoactive protein. The Plant Journal, 46(3) 369-384
Yamamizo, C., Kuchimura, K., Kobayashi, A., Katou, S., Kawakita, K., Jones, J. D. G., Doke, N., Yoshioka, H., (2006) Rewiring mitogen-activated protein kinase cascade by positive feedback confers potato blight resistance. Plant Physiology 140 (2) 681-692.
L. Michael Weaver, Michal R. Swiderski, Yan Li and Jonathan D. G. Jones (2006) The Arabidopsis thaliana TIR-NB-LRR R protein, RPP1A; protein localization and constitutive activation of defence by truncated alleles in tobacco and Arabidopsis. Plant Journal 47:829-840
Cyril Zipfel, Gernot Kunze, Delphine Chinchilla, Anne Caniard, Jonathan DG Jones, Thomas Boller, and Georg Felix (2006) Perception of the bacterial PAMP EF-Tu by the Arabidopsis receptor kinase EFR restricts Agrobacterium-mediated transformation Cell, 125:749-60
Miguel Angel Torres, J.D.G. Jones, and J Dangl (2006) Reactive Oxygen Species Signaling in Response to Pathogens Plant Physiol. 141 373-378
Vladimir Nekrasov, Andrea A. Ludwig, Jonathan D.G. Jones (2006) CITRX thioredoxin is a putative adaptor protein connecting Cf-9 and the ACIK1 protein kinase during the Cf-9/Avr9- induced defence response. FEBS Letters 580(17):4236-41
Chris Ridout, P. Skamnioti, O Porritt, S Sacristan, J. D.G. Jones & J K.M. Brown (2006) Multiple Avirulence Gene Paralogues in the Cereal Powdery Mildew Fungi. Plant Cell 2006, 18:2402-14.
Nomura ,K, DebRoy, S, Lee, YH Pumplin, N Jones, JDG, He, SH (2006) A Bacterial Virulence Protein Suppresses Host Innate Immunity to Cause Plant Disease. Science 313:220-3
Jones, JDG and Dangl, JL.(2006) The plant immune system. Nature. 444:323-9.
2005
Katou, S, Yoshioka, H, Kawakita, K, Rowland, O, Jones, J. D. G, Mori, H, Doke, N. (2005) Involvement of PPS3 phosphorylated by elicitor-responsive mitogen-activated protein kinases in the regulation of plant cell death. Plant Physiology 139(4) 1914-1926
Fritz-Laylin LK, Krishnamurthy N, Tö, Sjöder KV, and Jones JDG (2005) Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis Plant Phys 138: 611-623.
Heese-Peck A, Ludwig AA, and Jonathan D. G. Jones (2005) Rapid Phosphorylation of a Syntaxin during the Avr9/Cf-9-Race-Specific Signalling Pathway Plant Phys 138: 2406-2416.
Ludwig AA, Saitoh H, Felix G, Freymark G, Miersch O, Wasternack C, Boller T, Jones JDG, and Romeis T (2005) Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants PNAS 102 10736-10741.
Montoya, T., Nomura, T., Farrar, K., Kaneta, T.,Yokota, T., Harrison, K., Jones, J. D. G., Kamiya, Y. and Bishop, G.J. (2005) Patterns of Dwarf expression and brassinosteroid accumulation in tomato reveal the importance of brassinosteroid synthesis during fruit development, Plant Journal 42, 262.269.
Rooney HCE, van Klooster JW, van der Hoorn RAL, Joosten MAHJ, Jones JDG, and de Wit PJGM (2005) Cladosporium Avr2 Inhibits Tomato Rcr3 Protease Required for Cf-2-Dependent Disease Resistance Science 308: 1783-6.
Rowland O, Ludwig AA, Merrick CJ, Baillieul F, Tracy FE, Durrant WE, Fritz-Laylin L, Nekrasov V, Sjolander K, Yoshioka H, Jones JD (2005). Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9-Dependent Disease Resistance in Tomato. Plant Cell. 17:295-310.
Smilde WD, Brigneti G, Jagger L, Perkins S and Jones JDG (2005) Solanum mochiquense chromosome IX carries a novel late blight resistance gene Rpi-moc1 Theor. Appl. Genetics 110: 252-8.
Torres MA, Jones JD, Dangl JL. (2005) Pathogen-induced, NADPH oxidase-derived reactive oxygen intermediates suppress spread of cell death in Arabidopsis thaliana. Nat Genet. 37:1130-4.
van der Hoorn RA, Wulff BB, Rivas S, Durrant MC, van der Ploeg A, de Wit PJ, Jones JD. (2005) Structure-function analysis of Cf-9, a receptor-like protein with extracytoplasmic leucine-rich repeats. Plant Cell. 17:1000-15.
2004
Brigneti G, MartíHernáez AM, Jin H, Chen J, Baker B, Baulcombe DC and Jones JDG (2004) Virus-Induced Gene Silencing in Solanum Species Plant Journal 39:264-272.
Navarro L, Zipfel C, Rowland O, Robatzek S, Boller T, Jones JDG (2004) The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis. Plant Phys 135:1113-1128.
Reyes, M. E. C, Matthew, L., Wang, J., Bishop, G. J., Klimyuk, V., Jones, J. D. G., and Carroll, B.J. (2004) Ac Transposase Induces Methylation of a Ds Transposon in Transgenic Tomato Journal of Genome Science and Technology 3, 27-29.
Rivas S, Rougon-Cardoso A, Smoker M, Schauser L, Yoshioka H and Jones JDG (2004) CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence. EMBO J 23 2156-2165.
Tö, Brown D, Cooper A, Woods-Tö, Sjöder K, Jones JDG and Holub EB (2004) Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLV2 and tomato Cf-9. Plant Phys 135:1100-1112.
van der Hoorn RA, Jones JD. The plant proteolytic machinery and its role in defence. Curr Opin Plant Biol. (2004) Aug;7(4):400-7.
Wulff BBH, Thomas CM, Parniske M and Jones JDG Genetic variation at the tomato Cf-4/Cf-9 locus induced by EMS mutagenesis and intra-locus recombination. Genetics (2004) 167: 459-470.
Wulff BB, Kruijt M, Collins PL, Thomas CM, Ludwig AA, De Wit PJ, Jones JDG. Gene shuffling-generated and natural variants of the tomato resistance gene Cf-9 exhibit different auto-necrosis-inducing activities in Nicotiana species. Plant J. (2004) Dec;40(6):942-56.
Zhang Y, Dorey S, Swiderski M, Jones JDG. Expression of RPS4 in tobacco induces an AvrRps4-independent HR that requires EDS1, SGT1 and HSP90. Plant J. (2004) Oct;40(2):213-24.
Zipfel, C., Robatzek, S, Navarro, L., Oakeley, EJ, Jones, JDG, Felix G, Boller, T. (2004) Bacterial disease resistance in Arabidopsis through flagellin perception Nature 428 764-767.
2003
Foreman J, Demidchik V, Bothwell JHF, Miedema H, Mylona P, Torres MA, Linstead P, Brownlee C, Jones JDG, Davies J and Dolan L (2003) Reactive oxygen species produced by NADPH oxidase regulate plant cell growth Nature 422 442-6
Kwak, JM, Mori, IC, Pei, Z-M, Leonhardt, N., Torres, MA, Dangl, JL, Bloom, R., Bodde, S., Jones JDG., Schroeder, JI (2003) NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signalling in Arabidopsis EMBO J. 2003 Jun 2;22(11):2623-33.
van der Hoorn R.A.L, Rivas R, Wulff BBH, Jones JDG, and Joosten MAHJ,. (2003) Rapid migration in gel filtration of the Cf-4 and Cf-9 resistance proteins is an intrinsic property of Cf proteins and not due to their association with high molecular weight proteins. Plant J. 2003 Aug;35(3):305-15.
von Roepenack-Lahaye E, Newman M-A, Schornack S, Hammond-Kosack KE, Lahaye T, Jones JDG, Daniels MJ, Dow JM (2003) p-Coumaroylnoradrenaline, a Novel Plant Metabolite Implicated in Tomato Defense against Pathogens. J Biol Chem. 2003 Oct 31;278(44):43373-83.
Yoshioka H, Numata N, Nakajima K, Katou S, Kawakita K, Rowland, O, J. D. G. Jones, and N Doke (2003) Nicotiana benthamiana gp91phox Homologs NbrbohA and NbrbohB Participate in H2O2 Accumulation and Resistance to Phytophthora infestans Plant Cell 15: 706-718.
2002
Austin, M.J., Muskett, P., Kahn, K., Jones, J.D.G., Parker, J.E (2002) Regulatory Role of SGT1 in Early R Gene-Mediated Plant Defenses. Science 295 2077-2080.
Jones J D.G (2002) From physics and chemistry to plant biology. Plant Physiol. 2002 Feb;128(2):332-3.
KrüJ, Thomas, C.M., Golstein, C., Dixon, MS, Smoker M, Tang S, Mulder L and Jones JDG (2002) A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis Science (2002) 296 744-7.
Muskett, P., Kahn, K.,Austin, M.J., Moisan, L.J., Sadanandom, A., Shirasu, K., Jones, J.D.G., Parker, J.E (2002) Arabidopsis RAR1 exerts rate-limiting control of R gene-mediated defences against multiple pathogens Plant Cell 14 979-992.
Peart JR, Lu R, Sadanandom A, Malcuit I, Moffett P, Brice DC, Schauser L, Jaggard DA, Xiao S, Coleman MJ, Dow M, Jones JDG, Shirasu K, Baulcombe DC. (2002) Ubiquitin ligase-associated protein SGT1 is required for host and nonhost disease resistance in plants. Proc Natl Acad Sci U S A. ;99:10865-9.
Rivas, S., Mucyn T, van den Burg, H.A., Vervoort, J. and Jones, J.D.G. (2002) A ~400 kDa membrane-associated complex that contains one molecule of the resistance protein Cf-4. Plant Journal 29 783-796.
Rivas, S., Romeis, T., Jones, J.D.G. (2002) The Cf-9 disease resistance protein is present in a ~420 kDa heteromultimeric membrane-associated complex at one molecule per complex. Plant Cell 14: 689-702.
Torres, M.A. Dangl, J. L., and Jones, J. D. G. (2002) Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response Proc.Natl.Acad.Sci.USA 99 517-522.
van der Biezen E.A., Freddie C.T. Kahn K., Parker J.E. Jones J.D.G. (2002) Arabidopsis RPP4 is a Member of the RPP5 Multigene Family of TIR-NB-LRR genes and Confers Downy Mildew Resistance Through Multiple Signaling Components. Plant Journal 29 439-451.
2001
Dangl, J. L., and Jones, J. D. G. (2001). Plant pathogens and integrated defence responses to infection. Nature 411, 826-833.
Jones, J. D. G. (2001). Putting knowledge of plant disease resistance genes to work. Current Opinion in Plant Biology 4, 281-287.
Luderer, R., Rivas, S., Nurnberger, T., Mattei, B., Van den Hooven, H. W., Van der Hoorn, R. A. L., Romeis, T., Wehrfritz, J. M., Blume, B., Nennstiel, D., Zuidema, D., Vervoort, J., De Lorenzo, G., Jones, J. D. G., De Wit, P., and Joosten, M. (2001). No evidence for binding between resistance gene product Cf-9 of tomato and avirulence gene product AVR9 of Cladosporium fulvum. Molecular Plant-Microbe Interactions 14, 867-876.
Romeis T, Ludwig A, Martin R, and Jones JDG (2001) Calcium-Dependent Protein Kinases Play an Essential Role in a Plant Defence Response EMBO J 20 5556-5567.
Wulff B., Thomas, C.M., Smoker, M., Grant, M. and Jones, J.D.G. (2001) Domain swapping and gene shuffling identify sequences required for induction of an Avr-dependent hypersensitive response by the tomato Cf-4 and Cf-9 proteins Plant Cell 13 255- 272.
2000
Brading, P. A., Hammond-Kosack, K. E., Parr, A., and Jones, J. D. G. (2000). Salicylic acid is not required for Cf-2- and Cf-9-dependent resistance of tomato to Cladosporium fulvum. Plant Journal 23, 305-318.
Dixon, M. S., Golstein, C., Thomas, C. M., van der Biezen, E. A., and Jones, J. D. G. (2000). Genetic complexity of pathogen perception by plants: The example of Rcr3, a tomato gene required specifically by Cf-2. Proc Nat Acad Sci USA 97, 8807-8813.
Durrant, W., Rowland, O., Piedras, P., and Jones, J. D. G. (2000). cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12, 963- 977.
Jin H, Cominelli E, Bailey P, Parr A, Mehrtens F, Jones JDG, Tonelli C, Weisshaar B, Martin C. (2000) Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J. 2000 Nov 15;19(22):6150-61.
Piedras, P., Rivas, S., Droge, S., Hillmer, S., and Jones, J. D. G. (2000). Functional, c-myc-tagged Cf-9 resistance gene products are plasma membrane localised and glycosylated. The Plant Journal 21, 529-536.
Romeis, T., Piedras, P., and Jones, J. D. G. (2000). Resistance gene-dependent activation of a calcium-dependent protein kinase (CDPK) in the plant defence response. Plant Cell 12, 803-815.
Van der Biezen, E. A., Sun, J., Coleman, M. J., Bibb, M. J., and Jones, J. D. G. (2000). Arabidopsis RelA/SpoT homologs implicat (p)ppGpp in plant signalling. Proc.Natl.Acad.Sci.USA 97. 3747- 3752.
1999
Blatt, M. R., Grabov, A., Brearley, J., HammondKosack, K., and Jones, J. D. G. (1999). K+ channels of Cf-9 transgenic tobacco guard cells as targets for Cladosporium fulvum Avr9 elicitor-dependent signal transduction Plant Journal 19, 453-462.
Falk, A., Feys, B. J., Frost, L. N., Jones, J. D. G., Daniels, M. J., and Parker, J. E. (1999). EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases. .. Proc Nat Acad Sci USA 96, 3292-3297.
Noel, L., Moores,T.L., van der Biezen, E.A., Parniske, M., Daniels, M.J., Parker, J.E., Jones, J.D.G. (1999). Pronounced Intraspecific Haplotype Divergence at the RPP5 Complex Disease Resistance Locus in Arabidopsis. Plant Cell 11, 2099-2012.
Parniske, M., and Jones, J. D. G. (1999). Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family. Proc Nat Acad Sci USA 96, 5850-5855.
Parniske, M., Wulff, B. B. H., Bonnema, G., Thomas, C. M., Jones, D. A., and Jones, J. D. G. (1999). Homologues of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1. Molecular Plant-Microbe Interactions 12, 93-102.
Romeis, T., Pedro Piedras, Shuqun Zhang, Daniel F. Klessig, Heribert Hirt, and Jonathan D. G. Jones (1999) Rapid Avr 9- and Cf-9 .Dependent Activation of MAP Kinases in Tobacco Cell Cultures and Leaves: Convergence of Resistance Gene, Elicitor, Wound, and Salicylate Responses The Plant Cell 11: 273-288.
Takken, F.L.W, C.M. Thomas, M.H.A.J. Joosten, C. Golstein, N. Westerink, J. Hille, H.J.J., Nijkamp, P.J.G.M De Wit and J.D.G Jones (1999) A second gene at the tomato Cf-4 locus confers resistance to Cladosporium fulvum through recognition of a novel avirulence determinant. Plant Journal 20 279-288.
Tissier, A. F., Marillonnet, S., Klimyuk, V., Patel, K., Torres, M. A., Murphy, G., and Jones, J. D. G. (1999). Multiple independent defective Suppressor-mutator transposon insertions in Arabidopsis: A tool for functional genomics. Plant Cell 11, 1841-1852.
1998
Botella, M. A., Parker, J. E., Frost, L. N., Bittner-Eddy, P. D., Beynon, J. L., Daniels, M. J., Holub, E. B., and Jones, J. D. G. (1998). Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. The Plant Cell 10, 1847-1860
Dixon, M. S., Hatzixanthis, K., Jones, D. A., Harrison, K., and Jones, J. D. G. (1998). The tomato Cf-5 disease resistance gene and six homologs show pronounced allelic variation in leucine-rich repeat copy number. The Plant Cell 10, 1915-1925.
English, J. J., and J. D. G. Jones, 1998 Epigenetic instability and trans- silencing interactions associated with an SPT::Ac T-DNA locus in tobacco: Genetics 148, 457-469
Hammond-Kosack, K. E., Tang, S. J., Harrison, K., and Jones, J. D. G. (1998). The tomato Cf-9 disease resistance gene functions in tobacco and potato to confer responsiveness to the fungal avirulence gene product Avr9. The Plant Cell 10, 1251-1266.
Keddie, J. S., Carroll, B. J., Thomas, C. M., Reyes, M. E. C., Klimyuk, V., Holtan, H., Gruissem, W., and Jones, J. D. G. (1998). Transposon tagging of the Defective embryo and meristems gene of tomato. The Plant Cell 10, 877-887.
Piedras, P., Hammond Kosack, K. E., Harrison, K., and Jones, J. D. G. (1998). Rapid, Cf-9- and Avr9-dependent production of active oxygen species in tobacco suspension cultures. Molecular Plant-Microbe Interactions 11, 1155-1166.
Torres, M. A., Onouchi, H., Hamada, S., Machida, C., Hammond-Kosack, K. E. and Jones, J. D. G. (1998) Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox) Plant Journal 14 365-370
Van der Biezen, E. A., and Jones, J. D. G. (1998). The NB-ARC domain: A novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Current Biology 8, R226-R22
Van der Biezen, E. A., and Jones, J. D. G. (1998). Plant disease-resistance proteins and the gene-for-gene concept. Trends in Biochemical Sciences 23, 454-456.
1997
Hammond-Kosack, K. E. and J. D G Jones, (1997),Plant Disease Resistance Genes: Ann. Rev. Plant Physiol. Plant Mol. Biol., v. 48, p. 575-607.
Jones, DA and Jones, JDG (1997).The roles of leucine-rich repeat proteins in plant defences. Advances in Botanical Research incorporating Advances in Plant Pathology. 24 89 . 167
Klimyuk, V. I. and J. D. G. Jones, (1997), AtDMC1, the Arabidopsis homolog of the yeast DMC1 gene: characterization, transposon-induced allelic variation and meiosis-associated expression: The Plant Journal, 11, p. 1-14.
Parker, J. E., M. J. Coleman, V. Szabo, L. N. Frost, R. Schmidt, E. A. van der Biezen, T. Moores, C. Dean, M. J. Daniels, and J. D. G. Jones, (1997), The Arabidopsis Downy Mildew Resistance Gene RPP5 Shares Similarity to the Toll and Interleukin-1 Receptors with N and L6.: The Plant Cell, v. 9, p. 879-894
Parniske, M., K. E. Hammond-Kosack, C. Golstein, C. M. Thomas, K. Harrison, B. B. H. Wulff, and J. D. G. Jones ,(1997) Novel Disease Resistance Specificities Result From Sequence Exchange Between Tandemly Repeated Genes At The Cf-4/9 Locus Of Tomato: Cell 91, 821-832.
Thomas, C. M., D. A. Jones, M. Parniske, K. Harrison, P. Balint-Kurti, K. Hatzixanthis, and J. D. G. Jones, (1997) Characterization of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies a domain which determines recognitional specificity in Cf-4 and Cf-9: The Plant Cell 9, 2209-2224.
1996
Bishop, G, Harrison, K and Jones, JDG (1996).The tomato dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family. The Plant Cell 8 959-969
Dixon, MS, Jones, DA, Keddie, JS, Thomas, CM, Harrison, K and Jones, JDG (1996).The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84,451-459.
Hammond-Kosack, K. E., and J. D. G. Jones, (1996), Resistance gene-dependent plant defense responses.: The Plant Cell, 8, p. 1773-1791.
Hammond-Kosack, KE, Silverman, P, Raskin, I and Jones, JDG (1996).Race-specific elicitors of Cladosporium fulvum induce changes in cell morphology and the synthesis of ethylene and salicylic acid in tomato plants carrying the corresponding Cf disease resistance genes. Plant Physiol. 110,1381-1394.
Keddie, JS, Carroll, B, Jones, JDG and Gruissem, W (1996).The DCL gene of tomato is required for chloroplast development and palisade cell morphogenesis in leaves. EMBO J. 15 4208 . 4217
May, MJ, Hammond-Kosack, KE and Jones, JDG (1996).Involvement of reactive oxygen species, glutathione metabolism, and lipid peroxidation in the Cf-gene-dependent defense response of tomato cotyledons induced by race-specific elicitors of Cladosporium fulvum. Plant Physiol. 110,1367-1379.
1995
English, JJ, Harrison, K and Jones, JDG (1995).Aberrant transpositions of maize double Ds-like elements involve Ds on sister chromatids. The Plant Cell 7, 1235 - 1247
Staskawicz, BJ, Ausubel, FM, Baker, BJ, Ellis, JG and Jones, JDG (1995).Molecular genetics of plant disease resistance. Science 268,661-667.
Sundaresan, V, Springer, P, Volpe, T, et al (1995).Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9,1797-1810.
1994
Hammond-Kosack, KE, Harrison, K and Jones, JDG (1994).Developmentally regulated cell death on expression of the fungal avirulence gene Avr9 in tomato seedlings carrying the disease resistance gene Cf-9. Proc Nat Acad Sci USA 91,10445-10449.
Hammond-Kosack, KE, Jones, DA and Jones, JDG (1994).Identification of two genes required in tomato for full Cf-9-dependent resistance to Cladosporium fulvum. The Plant Cell 6,361-374.
Hammond-Kosack, K. E. and J. D. G. Jones (1994). .Incomplete dominance of tomato Cf genes for resistance to Cladosporium fulvum . Molecular Plant-Microbe Interactions. 7: 58-70.
Jones, DA, Thomas, CM, Hammond-Kosack, KE, Balint-Kurti, PJ and Jones, JDG (1994).Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science (Wash.). 266,789-793.
1993
Bancroft, I, Jones, JDG and Dean, C (1993).Heterologous transposon tagging of the DRL1 locus in Arabiodopsis. . The Plant Cell 5,631-638.
Dickinson, M. J., D. A. Jones, et al. (1993). .Close Linkage Between the Cf-2/Cf-5 and Mi Resistance Loci in Tomato.. Molecular Plant-Microbe Interactions 6(3): 341-347.
English, JJ, Harrison, KA and Jones, JDG (1993).A genetic analysis of DNA sequence requirements for Dissociation State I activity in tobacco. The Plant Cell 5,501-514.
Scofield, SR, English, JJ and Jones, JDG (1993).High level expression of the Activator transposase gene inhibits the excision of Dissociation in tobacco cotyledons. Cell 75,507-517.
1992
Jones, J. D. G., L. Shlumukov, et al. (1992). .Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants.. Transgenic Research 1: 285-297.
Scofield, S., K. A. Harrison, S. J. Nurrish, and J. D. G. Jones, (1992), Promoter fusions to the Ac transposase gene confer distinct patterns of Ds somatic and germinal excision in tobacco: The Plant Cell, 4, p. 573-582.
1990
Jones, J. D. G., F. C. Carland, E. Lim, E. Ralston, and H. K. Dooner, (1990), Preferential transposition of the maize element Activator to linked chromosomal locations in tobacco: The Plant Cell, 2, p. 701-707.
1989
Jones, J. D. G., F. M. Carland, P. Maliga, and H. K. Dooner, (1989), Visual detection of transposition of the maize element Activator (Ac) in tobacco seedlings: Science (Wash.)., 244, p. 204-207.
1988
Dean, C., J.D.G. Jones, et al. (1988), Influence of flanking sequences on variability in expression levels of an introduced gene in transgenic tobacco plants.. Nucleic Acids Research 16: 9267-9284.
Maliga, P., Z. Svab, et al. (1988). .Improved Expression of Streptomycin Resistance in Plants Due to a Deletion in the Streptomycin Phosphotransferase Coding Sequence.. Mol.Gen.Genet 214(3): 456-459.
1987
Jones, J. D. G., D. Gilbert, K. Grady, and R. Jorgensen, 1987, T-DNA structure and gene expression in petunia plants transformed by Agrobacterium C58 derivatives: Mol.Gen.Genet., 207, p. 478-485.
Jorgensen, R., C. Snyder, and Jones JDG. (1987). .T-DNA Is Organized Predominantly in Inverted Repeat Structures in Plants Transformed With Agrobacterium-Tumefaciens C58 Derivatives Mol.Gen.Genet 207(2-3): 471-477.
1986
Jones, J. D. G., K. L. Grady, T. V. Suslow, and J. R. Bedbrook, (1986), Isolation and characterization of genes encoding two chitinase enzymes from Serratia marcescens: EMBO J, 5, p. 467-473.
1985
Jones, J. D. G., P. Dunsmuir, and J. Bedbrook, (1985), High level expression of introduced chimaeric genes in regenerated transformed plants: EMBO J, 4, p. 2411-2418.
1983
Sundaresan, V., J. D. G. Jones, D. Ow, and F. Ausubel, (1983), Klebsiella pneumoniae nifA product activates the Rhizobium meliloti nitrogenase promoter: Nature,. 301, p. 728-732.
1982
Jones, J. D. G. and R. B. Flavell (1982). .The mapping of highly repeated DNA families and their relationship to heterochromatin in chromosomes of Secale cereale .. Chromosoma 86: 595-612.
1980
Bedbrook, J., J. D. G. Jones, M. O'Dell, R. Thompson, and R. B. Flavell, 1980, Molecular description of telomeric heterochromatin in Secale species: Cell, 19, p. 545-560.
