Publications

July 2018

Bioinformatics

Toda Y, Toh S, Bourdais G, Robatzek S, Maclean D, Kinoshita T (2018)

DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement. bioRxiv preprint Jul 9, 2018 doi: https://doi.org/10.1101/365098

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April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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April 2014

Bioinformatics, Sophien Kamoun Group

Saunders, D., Yoshida, K., Sambles, C., Glover, R., Clavijo, B., Corpas, M., Bunting, D., Dong, S., Clark, M., Swarbreck, D., Ayling, S., Bashton, M., Collin, S., Hosoya, T., Edwards, A., Crossman, L., Etherington, G., Win, J., Cano, L., Studholme, D., Downie, J.A., Caccamo, M., Kamoun, S., and MacLean, D. (2014)

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. bioRxiv, 5:98.

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October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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March 2008

Bioinformatics

Daniel MacLean, Cheryl A Jerome, Anthony PC Brown, and John C Gray. (2008)

Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and arabidopsis. Plant Molecular Biology, 66(5):475–490

August 2013

Bioinformatics

Dan MacLean. (2013)

Changing the rules of the game. eLife, 2

February 2015

Proteomics, Sophien Kamoun Group

Petre B, Saunders DG, Sklenar J, Lorrain C, Win J, Duplessis S, Kamoun S (2015)

Candidate effector proteins of the rust pathogen Melampsora larici-populina target diverse plant cell compartments. Mol Plant Microbe Interact. 2015 Feb 4. [Epub ahead of print]

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June 2016

Synthetic Biology

Patron NJ (2016)

Blueprints for green biotech: development and application of standards for plant synthetic biology. Biochem Soc Trans. 44:702-8. doi: 10.1042/BST20160044.

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March 2016

Bioinformatics

Page M, MacLean D, Schudoma C (2016)

blastjs: a BLAST+ wrapper for Node.js. BMC Research Notes (2016) 9:130 doi: 10.1186/s13104-016-1938-1

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July 2012

Bioinformatics

GJ Etherington and D MacLean. (2012)

Bioinformatik-analyse von next generation-sequenzierungsdaten. BIOforum-Forschung und Entwicklung, 35(1):34