Publications

August 2009

Bioinformatics

David J Studholme, Selena G Ibanez, Daniel MacLean, Jeffery L Dangl, Jeff H Chang, and John P Rathjen (2009)

A draft genome sequence and functional screen reveals the repertoire of type iii secreted proteins of pseudomonas syringae pathovar tabaci 11528. BMC Genomics, 10(1):395

December 2018

Jonathan Jones Group

Asai S, Furzer OJ, Cevik V, Kim DS, Ishaque N, Goritschnig S, Staskawicz BJ, Shirasu K, Jones JDG (2018)

A downy mildew effector evades recognition by polymorphism of expression and subcellular localization. Nature Communications Volume 9, Article number: 5192 (2018)

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December 2013

Jonathan Jones Group

Caillaud MC, Asai S, Rallapalli G, Piquerez S, Fabro G, Jones JD. (2013)

A downy mildew effector attenuates salicylic Acid-triggered immunity in Arabidopsis by interacting with the host mediator complex. PLoS Biol 11: e1001732

January 2013

Fitzgibbon, J., Beck, M., Zhou, J., Faulkner, C., Robatzek, S. and Oparka, K. (2013)

A developmental framework for complex plasmodesmata formation revealed by large-scale imaging of the Arabidopsis leaf epidermis. Plant Cell. 25: 57-70.

September 2009

Cyril Zipfel Group, Jonathan Jones Group

Li J, Chu ZH, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C and Jones JDG (2009)

A dedicated subset of ER quality control components required for plant innate immunity. Proc. Natl. Acad. Sci. USA 106: 15973-15978.

July 2019

Sophien Kamoun Group

Wu CH, Adachi H, Concepcion JC, Castells-Graells R, Nekrasov V, Kamoun S (2019)

A CRISPR/Cas9 mediated 53 kb deletion of the NRC4 gene cluster of tomato does not affect bacterial flagellin-triggered immunity. bioRxiv preprint Jul 10, 2019 doi: https://doi.org/10.1101/697425

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May 2019

Bioinformatics

MacLean D (2019)

A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions. bioRxiv preprint Apr 28, 2019 doi: https://doi.org/10.1101/618926

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September 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant Journal 92, 5-18.

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July 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant J. 2017 Jul 25. doi: 10.1111/tpj.13640.

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May 2020

Jonathan Jones Group

Witek K, Lin X, Karki HS, Jupe F, Witek AI, Steuernagel B, Stam R, Van Oosterhout C, Fairhead S, Cocker JM, Bhanvadia S, Barrett W, Song T, Vleeshouwers VGAA, Tomlinson L, Wulff BBH, Jones JDG (2020)

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector. bioRxiv preprint May 15, 2020 doi: https://doi.org/10.1101/2020.05.15.095497

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