Publications

May 2019

Bioinformatics

MacLean D (2019)

A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions. bioRxiv preprint Apr 28, 2019 doi: https://doi.org/10.1101/618926

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September 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant Journal 92, 5-18.

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July 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant J. 2017 Jul 25. doi: 10.1111/tpj.13640.

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December 2012

Sophien Kamoun Group

Wang, E., Schornack, S., Marsh, J.F., Gobbato, E., Schwessinger, B., Eastmond, P., Schultze, M., Kamoun, S., and Oldroyd, G.E.D. 2012.

A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Current Biology, 22:2242-2246.

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February 2010

Bioinformatics

Daniel MacLean and David J Studholme. (2010)

A boolean model of the pseudomonas syringae hrp regulon predicts a tightly regulated system. PloS ONE, 5(2):e9101.

October 2006

Jonathan Jones Group

Nomura ,K, DebRoy, S, Lee, YH Pumplin, N Jones, JDG, He, SH (2006)

A Bacterial Virulence Protein Suppresses Host Innate Immunity to Cause Plant Disease. Science 313:220-3

March 2014

Cyril Zipfel Group, Proteomics

Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S, Kadota Y, Oh MH, Sklenar J, Derbyshire P, Lozano-Duran R, Gro Malinovsky F, Monaghan J, Menke FL, Huber SC, He SY and Zipfel C (2014)

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation. Science, 343 (6178): 1509-1512.

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June 2019

Cyril Zipfel Group, Proteomics

Wong JEMM, Nadzieja M, Madsen LH, Bücherl CA, Dam S, Sandal NN, Couto D, Derbyshire P, Uldum-Berentsen M, Schroeder S, Schwämmle V, Nogueira FCS, Asmussen MH, Thirup S, Radutoiu S, Blaise M, Andersen KR, Menke FLH, Zipfel C, Stougaard J (2019)

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proc Natl Acad Sci U S A. 2019 Jun 25. pii: 201815425. doi: 10.1073/pnas.1815425116.

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May 2014

Sophien Kamoun Group

Lorrain C, Kamoun S and Petre B (2014)

Populus trichocarpa Coproporphyrinogen III oxidase (PtCPO) localizes in sub-chloroplastic structures.

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November 2017

Sophien Kamoun Group

Chen H, Shu H, Wang L, Zhang F, Li X, Ochola S, Mao F, Ma H, Ye W, Gu T, Jiang L, Wu Y, Wang Y, Kamoun S, Dong S (2017)

Phytophthora methylomes modulated by expanded 6mA methyltransferases are associated with adaptive genome regions. bioRxiv preprint Nov 11, 2017 doi: https://doi.org/10.1101/217646

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