Publications

June 2011

Sophien Kamoun Group

Huitema, E., Smoker, M., and Kamoun S. 2011.

A straightforward protocol for electro-transformation of Phytophthora capsici zoospores. In “Plant Immunity: Methods and Protocols”, J.M. McDowell, ed. Methods in Molecular Biology, 712:129-135.

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April 2002

Jonathan Jones Group

Kruger J., Thomas C. M., Golstein C., Dixon M. S., Smoker M., Tang S., Mulder L., Jones J. D. G.(2002)

A tomato cysteine protease required for cf-2- dependent disease resistance and supression of autonecrosis. Science 296 744-747

August 2008

Bioinformatics

Simon Moxon, Frank Schwach, Tamas Dalmay, Dan MacLean, David J Studholme, and Vincent Moulton (2008)

A toolkit for analysing large-scale plant small rna datasets. Bioinformatics, 24(19):2252–2253,

May 2020

Sophien Kamoun Group

Harant A, Sakai T, Kamoun S, Adachi H (2020)

A vector system for fast-forward in vivo studies of the ZAR1 resistosome in the model plant Nicotiana benthamiana. bioRxiv preprint May 16, 2020 doi: https://doi.org/10.1101/2020.05.15.097584

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July 2018

Bioinformatics, Jonathan Jones Group

Shrestha RK, Ding P, Jones JDG, MacLean D (2018)

A workflow for simplified analysis of ATAC-cap-seq data in R. GigaScience, 2017, 1–7. DOI: 10.1093/gigascience/giy080

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April 2002

Jonathan Jones Group

Rivas, S., Mucyn T, van den Burg, H.A., Vervoort, J. and Jones, J.D.G. (2002)

A ~400 kDa membrane-associated complex that contains one molecule of the resistance protein Cf-4. Plant Journal 29 783-796.

August 1995

Jonathan Jones Group

English, JJ, Harrison, K and Jones, JDG (1995)

Aberrant transpositions of maize double Ds-like elements involve Ds on sister chromatids. The Plant Cell 7, 1235 – 1247

September 2004

Jonathan Jones Group

Reyes, M. E. C, Matthew, L., Wang, J., Bishop, G. J., Klimyuk, V., Jones, J. D. G., and Carroll, B.J. (2004)

Ac Transposase Induces Methylation of a Ds Transposon in Transgenic Tomato Journal of Genome Science and Technology 3, 27-29.

April 2016

Jonathan Jones Group

Witek K, Jupe F, Witek AI, Baker D, Clark MD, Jones JDG (2016)

Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology (2016) doi:10.1038/nbt.3540

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July 2020

Bioinformatics

Kristianingsih R, MacLean D (2020)

Accurate plant pathogen effector protein classification ab initio with deepredeff, an ensemble of convolutional neural networks. bioRxiv preprint July 09, 2020 doi: https://doi.org/10.1101/2020.07.08.193250

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