Publications

December 2011

Bioinformatics

JP Carr, Mathew Lewsey, J Westwood, Heiko Ziebell, Daniel MacLean, A Kleczkowski, M Stevens, and John A Walsh. (2011)

The effects of cucumber mosaic virus 2b protein on methyl jasmonate induced transcriptional re- sponses and plant-aphid interactions in arabidopsis

March 2008

Bioinformatics, Jonathan Jones Group

Harrold A van den Burg, Dimitrios I Tsitsigiannis, Owen Rowland, Jane Lo, Ghanasyam Rallapalli, Daniel MacLean, Frank LW Takken, and Jonathan DG Jones. (2008)

The f-box protein acre189/acif1 regulates cell death and defense responses activated during pathogen recognition in tobacco and tomato. The Plant Cell Online, 20(3):697–719

September 2014

Bioinformatics

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK (2014)

The GOBLET Training Portal: A Global Repository of Bioinformatics Training Materials, Courses and Trainers. Bioinformatics (2014) doi: 10.1093/bioinformatics/btu601

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June 2011

Bioinformatics, Jonathan Jones Group

Alexandre Robert-Seilaniantz, Dan MacLean, Yusuke Jikumaru, Lionel Hill, Shinjiro Yamaguchi, Yuji Kamiya, and Jonathan DG Jones. (2011)

The microrna mir393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates. The Plant Journal, 67(2):218–231

October 2014

Bioinformatics

Younsi R and MacLean D (2014)

Using 2k + 2 bubble searches to find Single Nucleotide Polymorphisms in k-mer graphs. Bioinformatics 2014 Oct 24. pii: btu706. [Epub ahead of print]

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May 2018

Bioinformatics, Jonathan Jones Group, Tissue Culture & Transformation

Tomlinson L, Yang Y, Emenecker R, Smoker M, Taylor J, Perkins S, Smith J, MacLean D, Olszewski NE, Jones JDG (2018)

Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele. Plant Biotechnol J. 2018 May 24. doi: 10.1111/pbi.12952.

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March 2013

Bioinformatics

Rhys A Farrer, Daniel A Henk, Dan MacLean, David J Studholme, and Matthew C Fisher. (2013)

Using false discovery rates to benchmark snp-callers in next-generation sequencing projects. Scientific Reports, 3