Publications

March 2017

Bioinformatics, Cyril Zipfel Group

Bücherl CA, Jarsch IK, Schudoma C, Segonzac C, Mbengue M, Robatzek S, MacLean D, Ott T, Zipfel C (2017)

Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife 2017;10.7554/eLife.25114

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February 2021

Bioinformatics, Proteomics, Sophien Kamoun Group, Wenbo Ma Group

Derevnina L, Contreras MP, Adachi H, Upson J, Cruces AV, Xie R, Sklenar J, Menke FLH, Mugford ST, MacLean D, Ma W, Hogenhout SA, Goverse A, Maqbool A, Wu CH, Kamoun S (2021)

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. bioRxiv preprint Feb 03, 2021 doi: https://doi.org/10.1101/2021.02.03.429184

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September 2019

Bioinformatics, Sophien Kamoun Group

De la Concepcion JC, Franceschetti M, MacLean D, Terauchi R, Kamoun S, Banfield MJ (2019)

Protein engineering expands the effector recognition profile of a rice NLR immune receptor. Elife. 2019 Sep 19;8. pii: e47713. doi: 10.7554/eLife.47713.

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October 2019

Bioinformatics

MacLean D (2019)

R Bioinformatics Cookbook: Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis. Packt Publishing.

January 2019

Bioinformatics

Rallapalli G, Corredor-Moreno P, Chalstrey E, Page M, MacLean D (2019)

Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. BMC Bioinformatics. 2019 Jan 7;20(1):9. doi: 10.1186/s12859-018-2515-5.

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September 2014

Bioinformatics

Leggett RM and MacLean D (2014)

Reference-free SNP detection: dealing with the data deluge. BMC Genomics 2014, 15(Suppl 4):S10 doi:10.1186/1471-2164-15-S4-S10

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October 2013

Bioinformatics, Jonathan Jones Group

Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JD. (2013)

Resistance gene enrichment sequencing (renseq) enables reannotation of the nb-lrr gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. The Plant Journal, 76(3):530–544

October 2012

Bioinformatics

Beck, M., Zhou, J., Faulkner, C., MacLean, D. and Robatzek, S. (2012)

Spatio-temporal cellular dynamics of the Arabidopsis flagellin receptor reveal activation status-dependent endosomal sorting. Plant Cell. 24: 4205-4219.

June 2013

Bioinformatics

Graham J Etherington and Daniel MacLean. (2013)

Svgenes: a library for ren- dering genomic features in scalable vector graphic format. Bioinformatics, 29(15):1890–1892

August 2016

Bioinformatics, Cyril Zipfel Group, Proteomics

Couto D, Niebergall R, Liang X, Bücherl CA, Sklenar J, Macho AP, Ntoukakis V, Derbyshire P, Altenbach D, Maclean D, Robatzek S, Uhrig J, Menke F, Zhou JM, Zipfel C (2016)

The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathog. 12(8):e1005811. doi: 10.1371/journal.ppat.1005811.

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