Publications

February 2010

Bioinformatics

Daniel MacLean, Vincent Moulton, and David J Studholme. (2010)

Finding srna generative locales from high-throughput sequencing data with nibls. BMC Bioinformatics, 11(1):93,

May 2014

Bioinformatics, Jonathan Jones Group

Ghanasyam Rallapalli, Eric Kemen, Alexandre Robert-Seilaniantz, Cecile Segonzac, Graham Etherington, Kee Sohn, Daniel MacLean, and Jonathan Jones. (2014)

Exprss: an illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics, 15(1):341

Read more

August 2018

Cyril Zipfel Group, Tissue Culture & Transformation

Pfeilmeier S, George J, Morel A, Roy S, Smoker M, Stransfeld L, Downie JA, Peeters N, Malone JG, Zipfel C (2018)

Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen-fixing rhizobial symbiosis. Plant Biotechnol J. 2018 Aug 18. doi: 10.1111/pbi.12999.

Read more

March 2010

Bioinformatics

Daniel MacLean, Nataliya Elina, Ericka R Havecker, Susanne B Heim- staedt, David J Studholme, and David C Baulcombe. (2010)

Evidence for large complex networks of plant short silencing rnas. PLoS One, 5(3):e9901

October 2017

Cyril Zipfel Group, Tissue Culture & Transformation

Boschi F, Schvartzman C, Murchio S, Ferreira V, Siri MI, Galván GA, Smoker M, Stransfeld L, Zipfel C, Vilaró FL, Dalla-Rizza M (2017)

Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii. Front. Plant Sci., 25 September 2017 | https://doi.org/10.3389/fpls.2017.01642

Read more

February 2014

Tissue Culture & Transformation

Jones JD, Witek K, Verweij W, Jupe F, Cooke D, Dorling S, Tomlinson L, Smoker M, Perkins S, Foster S (2014)

Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B 369 20130087

Read more

January 2014

Proteomics, Sophien Kamoun Group

Dong, S., Stam, R., Cano, L.M., Song, J., Sklenar, J., Yoshida, K., Bozkurt, T.O., Oliva, R., Liu, Z., Tian, M., Win, J., Banfield, M.J., Jones, A.M.E., van der Hoorn, R.A.L., and Kamoun, S. (2014)

Effector specialization in a lineage of the Irish potato famine pathogen. Science, 343:552-555.

Read more

November 2014

Sophien Kamoun Group, Synthetic Biology

Belhaj K, Chaparro-Garcia A, Kamoun S, Patron NJ, Nekrasov V (2015)

Editing plant genomes with CRISPR/Cas9. Current Opinion in Biotechnology Volume 32, April 2015, Pages 76–84

Read more

May 2014

Synthetic Biology

Patron NJ (2014)

DNA Assembly for plant biology: techniques and tools. Current Opinion in Plant Biology 2014, 19:14–19

Read more

October 2010

Bioinformatics

Mathew G Lewsey, Alex M Murphy, Daniel MacLean, Neil Dalchau, Jack H Westwood, Keith Macaulay, Mark H Bennett, Michael Moulin, David E Hanke, Glen Powell, et al. (2010)

Disruption of two defensive signaling pathways by a viral rna silencing suppressor. Molecular Plant-Microbe Interactions, 23(7):835–845.