Publications

January 2010

Bioinformatics

Pawel Durek, Robert Schmidt, Joshua L Heazlewood, Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, and Waltraud X Schulze. (2010)

Phosphat: the arabidopsis thaliana phosphorylation site database. an up- date. Nucleic Acids Research, 38(suppl 1):D828–D834

March 2009

Bioinformatics

Alexandra ME Jones, Daniel MacLean, David J Studholme, Antonio Serna-Sanz, Erik Andreasson, John P Rathjen, and Scott C Peck. (2009)

Phosphoproteomic analysis of nuclei-enriched fractions from arabidopsis thaliana. Journal of Proteomics, 72(3):439–451

March 2017

Bioinformatics, Cyril Zipfel Group

Bücherl CA, Jarsch IK, Schudoma C, Segonzac C, Mbengue M, Robatzek S, MacLean D, Ott T, Zipfel C (2017)

Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife 2017;10.7554/eLife.25114

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September 2014

Bioinformatics

Leggett RM and MacLean D (2014)

Reference-free SNP detection: dealing with the data deluge. BMC Genomics 2014, 15(Suppl 4):S10 doi:10.1186/1471-2164-15-S4-S10

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October 2013

Bioinformatics, Jonathan Jones Group

Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JD. (2013)

Resistance gene enrichment sequencing (renseq) enables reannotation of the nb-lrr gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. The Plant Journal, 76(3):530–544

October 2012

Bioinformatics

Beck, M., Zhou, J., Faulkner, C., MacLean, D. and Robatzek, S. (2012)

Spatio-temporal cellular dynamics of the Arabidopsis flagellin receptor reveal activation status-dependent endosomal sorting. Plant Cell. 24: 4205-4219.

June 2013

Bioinformatics

Graham J Etherington and Daniel MacLean. (2013)

Svgenes: a library for ren- dering genomic features in scalable vector graphic format. Bioinformatics, 29(15):1890–1892

August 2016

Bioinformatics, Cyril Zipfel Group, Proteomics

Couto D, Niebergall R, Liang X, Bücherl CA, Sklenar J, Macho AP, Ntoukakis V, Derbyshire P, Altenbach D, Maclean D, Robatzek S, Uhrig J, Menke F, Zhou JM, Zipfel C (2016)

The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathog. 12(8):e1005811. doi: 10.1371/journal.ppat.1005811.

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April 2018

Bioinformatics

McMullan M, Rafiqi M, Kaithakottil G, Clavijo BJ, Bilham L, Orton E, Percival-Alwyn L, Ward BJ, Edwards A, Saunders DGO, Garcia Accinelli G, Wright J, Verweij W, Koutsovoulos G, Yoshida K, Hosoya T, Williamson L, Jennings P, Ioos R, Husson C, Hietala AM, Vivian-Smith A, Solheim H, MacLean D, Fosker C, Hall N, Brown JKM, Swarbreck D, Blaxter M, Downie JA, Clark MD (2018)

The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nat Ecol Evol. 2018 Apr 23. doi: 10.1038/s41559-018-0548-9.

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November 2014

Bioinformatics, Cyril Zipfel Group

Monaghan J, Matschi S, Shorinola O, Rovenich H, Matei A, Segonzac C, Gro Malinovsky F, Rathjen JP, MacLean D, Romeis T, Zipfel C (2014)

The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe (2014) Volume 16, p605–615. DOI: http://dx.doi.org/10.1016/j.chom.2014.10.007

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