Publications

February 2012

Bioinformatics

Raoul JP Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Dan MacLean, Chase A Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, et al. (2012)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinformatics, 28(7):1035–1037

January 2016

Abd-El-Haliem A, Vossen JH, van Zeijl A, Dezhsetan S, Testerink C, Seidl MF, Beck M, Strutt J, Robatzek S, Joosten MHAJ (2016)

Biochemical characterization of the tomato phosphatidylinositol-specific phospholipase C (PI-PLC) family and its role in plant immunity. Biochimica et Biophysica Acta (BBA) – Molecular and Cell Biology of Lipids doi:10.1016/j.bbalip.2016.01.017

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May 2012

Bioinformatics

Ricardo Ramirez-Gonzalez, Raoul JP Bonnal, Mario Caccamo, Daniel MacLean, et al. (2012)

Bio-samtools: Ruby bindings for samtools, a library for accessing bam files containing high-throughput sequence alignments. Source Code for Biology and Medicine, 7(6),

March 2015

Bioinformatics

Etherington GJ, Ricardo H. Ramirez-Gonzalez RH, MacLean D (2015)

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby. Bioinformatics (2015) doi: 10.1093/bioinformatics/btv178

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May 2016

Pfeilmeier S, Caly DL, Malone JG (2016)

Bacterial pathogenesis of plants: Future challenges from a microbial perspective. Mol Plant Pathol. 2016 May 12. doi: 10.1111/mpp.12427

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March 2004

Cyril Zipfel Group, Jonathan Jones Group

Zipfel C, Robatzek S, Navarro L, Oakeley E, Jones JDG, Felix G and Boller T (2004).

Bacterial disease resistance through flagellin perception in Arabidopsis. Nature, 428: 764-767.

November 2016

Cyril Zipfel Group

Xin XF, Nomura K, Aung K, Velásquez AC, Yao J, Boutrot F, Chang JH, Zipfel C, He SY (2016)

Bacteria establish an aqueous living space in plants crucial for virulence. Nature 539, 524–529 doi:10.1038/nature20166

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January 2009

Sophien Kamoun Group

Bai, X., Correa, V.R., Toruno, T.Y., Ammar, E.-D., Kamoun, S., and Hogenhout, S.A. 2009.

AY-WB phytoplasma secretes a protein that targets plant cell nuclei. Molecular Plant-Microbe Interactions, 22:18-30.

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January 2016

Postma J, Liebrand TW, Bi G, Evrard A, Bye RR, Mbengue M, Kuhn H, Joosten MH, Robatzek S (2015)

Avr4 promotes Cf-4 receptor-like protein association with the BAK1/SERK3 receptor-like kinase to initiate receptor endocytosis and plant immunity. New Phytol. 2016 Jan 14. doi: 10.1111/nph.13802.

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