December 2010

Bioinformatics, Sophien Kamoun Group

Raffaele, S., Farrer, R.A., Cano, L.M., Studholme, D.J., MacLean, D., Thines, M., Jiang, R.H.Y., Zody, M.C., Kunjeti, S.G., Donofrio, N.M., Meyers, B.C., Nusbaum, C., and Kamoun, S. 2010.

Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330:1540-1543.

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October 2010


Mathew G Lewsey, Alex M Murphy, Daniel MacLean, Neil Dalchau, Jack H Westwood, Keith Macaulay, Mark H Bennett, Michael Moulin, David E Hanke, Glen Powell, et al. (2010)

Disruption of two defensive signaling pathways by a viral rna silencing suppressor. Molecular Plant-Microbe Interactions, 23(7):835–845.

September 2010


Salomon, S., Grunewald, D., Stüber, K., Schaaf, S., MacLean, D., Schulze-Lefert, P. and Robatzek, S. (2010)

High throughput confocal imaging of intact live tissue enables quantification of membrane trafficking in Arabidopsis. Plant Physiol. 154: 1096-1104.

August 2010


Sylviane Comparot-Moss, Oliver Kotting, Michaela Stettler, Christoph Edner, Alexander Graf, Sean E Weise, Sebastian Streb, Wei-Ling Lue, Daniel MacLean, Sebastian Mahlow, et al. (2010)

A putative phosphatase, lsf1, is required for normal starch turnover in arabidopsis leaves. Plant Physiology, 152(2):685–697

August 2010


MG Lewsey, AM Murphy, D MacLean, N Dalchau, J Westwood, K Macaulay, MH Bennett, M Moulin, DE Hanke, G Powell, et al. (2010)

Disruption of the salicylate and jasmonate signaling pathways by the cucumber mosaic virus 2b rna silencing suppressor. In PHYTOPATHOLOGY, volume 100, pages S70–S70

July 2010

Bioinformatics, Jonathan Jones Group

David J Studholme, Eric Kemen, Daniel MacLean, Sebastian Schornack, Valente Aritua, Richard Thwaites, Murray Grant, Julian Smith, and Jonathan DG Jones. (2010)

Genome-wide sequencing data reveals virulence factors implicated in banana xanthomonas wilt. FEMS Microbiology Letters, 310(2):182–192.

March 2010


Daniel MacLean, Nataliya Elina, Ericka R Havecker, Susanne B Heim- staedt, David J Studholme, and David C Baulcombe. (2010)

Evidence for large complex networks of plant short silencing rnas. PLoS One, 5(3):e9901

February 2010


Daniel MacLean, Vincent Moulton, and David J Studholme. (2010)

Finding srna generative locales from high-throughput sequencing data with nibls. BMC Bioinformatics, 11(1):93,

February 2010


Daniel MacLean and David J Studholme. (2010)

A boolean model of the pseudomonas syringae hrp regulon predicts a tightly regulated system. PloS ONE, 5(2):e9101.

January 2010


Pawel Durek, Robert Schmidt, Joshua L Heazlewood, Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, and Waltraud X Schulze. (2010)

Phosphat: the arabidopsis thaliana phosphorylation site database. an up- date. Nucleic Acids Research, 38(suppl 1):D828–D834