Publications

April 2013

Bioinformatics, Sophien Kamoun Group

Cantu, D., Segovia, V., Maclean, D., Bayles, R., Chen, X., Kamoun, S., Dubcovsky, J., Saunders, D.G., and Uauy, C. 2013.

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics, 14:270.

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October 2012

Bioinformatics, Sophien Kamoun Group

Cooke, D.E.L., Cano, L.M., Raffaele, S., Bain, R.A., Cooke, L.R., Etherington, G.J., Deahl, K.L., Farrer, R.A., Gilroy, E.M., Goss, E.M., Grunwald, N.J., Hein, I., MacLean, D., McNicol, J.W., Randall, E., Oliva, R.F., Pel, M.A., Shaw, D.S., Squires, J.N., Taylor, M.C., Vleeshouwers, V.G.A.A., Birch, P.R.J., Lees, A.K., and Kamoun, S. 2012.

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen. PLoS Pathogens, 8:e1002940.

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July 2011

Bioinformatics, Jonathan Jones Group

Eric Kemen, Anastasia Gardiner, Torsten Schultz-Larsen, Ariane C Ke- men, Alexi L Balmuth, Alexandre Robert-Seilaniantz, Kate Bailey, Eric Holub, David J Studholme, Dan MacLean, et al. (2011)

Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of arabidopsis thaliana. PLoS Biology, 9(7):e1001094

July 2011

Bioinformatics

Ricardo Ramirez-Gonzalez, Mario Caccamo, and Daniel MacLean (2011)

Gee fu: a sequence version and web-services database tool for genomic assembly, genome feature and ngs data. Bioinformatics, 27(19):2754–2755

February 2010

Bioinformatics

Daniel MacLean, Vincent Moulton, and David J Studholme. (2010)

Finding srna generative locales from high-throughput sequencing data with nibls. BMC Bioinformatics, 11(1):93,

May 2014

Bioinformatics, Jonathan Jones Group

Ghanasyam Rallapalli, Eric Kemen, Alexandre Robert-Seilaniantz, Cecile Segonzac, Graham Etherington, Kee Sohn, Daniel MacLean, and Jonathan Jones. (2014)

Exprss: an illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics, 15(1):341

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March 2010

Bioinformatics

Daniel MacLean, Nataliya Elina, Ericka R Havecker, Susanne B Heim- staedt, David J Studholme, and David C Baulcombe. (2010)

Evidence for large complex networks of plant short silencing rnas. PLoS One, 5(3):e9901

October 2010

Bioinformatics

Mathew G Lewsey, Alex M Murphy, Daniel MacLean, Neil Dalchau, Jack H Westwood, Keith Macaulay, Mark H Bennett, Michael Moulin, David E Hanke, Glen Powell, et al. (2010)

Disruption of two defensive signaling pathways by a viral rna silencing suppressor. Molecular Plant-Microbe Interactions, 23(7):835–845.

August 2010

Bioinformatics

MG Lewsey, AM Murphy, D MacLean, N Dalchau, J Westwood, K Macaulay, MH Bennett, M Moulin, DE Hanke, G Powell, et al. (2010)

Disruption of the salicylate and jasmonate signaling pathways by the cucumber mosaic virus 2b rna silencing suppressor. In PHYTOPATHOLOGY, volume 100, pages S70–S70

April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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