Publications

January 2014

Bioinformatics

Dan MacLean. (2014)

Out of the woods. ash dieback and the future of emergent pathogenomics. Molecular Plant Pathology, 15(1):1–4

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June 2011

Bioinformatics

Etherington G and MacLean D (2011)

Next-Generation techniques for analysing Next-Generation sequence data (2011). GIT Laboratory Journal, 15, 11-12, pp 10-11

January 2011

Bioinformatics

John Walshaw, Graham J Etherington, and Dan MacLean (2011)

Next-generation sequencing approaches to metagenomics. page 63. Horizon Scientific Press

January 2016

Synthetic Biology

Raitskin O, Patron NJ (2015)

Multi-gene engineering in plants with RNA-guided Cas9 nuclease. Curr Opin Biotechnol. 2015 doi: 10.1016/j.copbio.2015.11.008

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February 2016

Synthetic Biology

Parry G, Patron N, Bastow R, Matthewman C (2016)

Meeting report: GARNet/OpenPlant CRISPR-Cas workshop. Plant Methods 2016 12:6 DOI: 10.1186/s13007-016-0104-z

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January 2015

Bioinformatics, Cyril Zipfel Group

Etherington GJ, Monaghan J, Zipfel C, MacLean D (2014)

Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods 2014, 10:306. doi:10.1186/s13007-014-0041-7

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September 2013

Bioinformatics, Sophien Kamoun Group

Cano, L.M., Raffaele, S., Haugen, R.H., Saunders, D.G.O., Leonelli, L., MacLean, D., Hogenhout, S.A., and Kamoun, S. 2013.

Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta. PLOS ONE, 8:e75293.

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July 2015

Bioinformatics, Sophien Kamoun Group

Rallapalli G, Fraxinus Players, Saunders DGO, Yoshida K, Edwards A, Lugo CA, Collin S, Clavijo B, Corpas M, Swarbreck D, Clark M, Downie JA, Kamoun S, Team Cooper, MacLean D (2015)

Lessons from Fraxinus, a crowd-sourced citizen science game in genomics. eLife 2015;4:e07460

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March 2016

Proteomics

Vit O, Man P, Kadek A, Hausner J, Sklenar J, Harant K, Novak P, Scigelova M, Woffendin G, Petrak J (2016)

Large-scale identification of membrane proteins based on analysis of trypsin-protected transmembrane segments. J Proteomics. 2016 Mar 11. pii: S1874-3919(16)30069-0. doi: 10.1016/j.jprot.2016.03.016.

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March 2010

Cyril Zipfel Group, Jonathan Jones Group, Tissue Culture & Transformation

Lacombe S, Rougon-Cardoso A, Sherwood E, Peeters N, Dahlbeck D, van Esse HP, Smoker M, Rallapalli G, Thomma BPHJ, Staskawicz B, Jones JDG and Zipfel C (2010)

Inter-family transfer of a plant pattern recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 4 :365-369.