Publications

January 2015

Bioinformatics, Cyril Zipfel Group

Etherington GJ, Monaghan J, Zipfel C, MacLean D (2014)

Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods 2014, 10:306. doi:10.1186/s13007-014-0041-7

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September 2013

Bioinformatics, Sophien Kamoun Group

Cano, L.M., Raffaele, S., Haugen, R.H., Saunders, D.G.O., Leonelli, L., MacLean, D., Hogenhout, S.A., and Kamoun, S. 2013.

Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta. PLOS ONE, 8:e75293.

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July 2015

Bioinformatics, Sophien Kamoun Group

Rallapalli G, Fraxinus Players, Saunders DGO, Yoshida K, Edwards A, Lugo CA, Collin S, Clavijo B, Corpas M, Swarbreck D, Clark M, Downie JA, Kamoun S, Team Cooper, MacLean D (2015)

Lessons from Fraxinus, a crowd-sourced citizen science game in genomics. eLife 2015;4:e07460

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March 2016

Proteomics

Vit O, Man P, Kadek A, Hausner J, Sklenar J, Harant K, Novak P, Scigelova M, Woffendin G, Petrak J (2016)

Large-scale identification of membrane proteins based on analysis of trypsin-protected transmembrane segments. J Proteomics. 2016 Mar 11. pii: S1874-3919(16)30069-0. doi: 10.1016/j.jprot.2016.03.016.

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March 2010

Cyril Zipfel Group, Jonathan Jones Group, Tissue Culture & Transformation

Lacombe S, Rougon-Cardoso A, Sherwood E, Peeters N, Dahlbeck D, van Esse HP, Smoker M, Rallapalli G, Thomma BPHJ, Staskawicz B, Jones JDG and Zipfel C (2010)

Inter-family transfer of a plant pattern recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 4 :365-369.

November 2015

Synthetic Biology

Lawrenson T, Shorinola O, Stacey N, Li C, Ƙstergaard L, Patron N, Uauy C, Harwood W (2015)

Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease. Genome Biology 2015, 16:258 doi:10.1186/s13059-015-0826-7

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November 2015

Ksenia Krasileva Group, Proteomics, Sophien Kamoun Group

Petre B, Saunders DGO, Sklenar J, Lorrain C, Krasileva KV, Win j, Duplessis D, Kamoun S (2015)

In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment. bioRxiv preprint November 19, 2015 doi: http://dx.doi.org/10.1101/032276

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March 2013

Bioinformatics, Jonathan Jones Group

Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan DG Jones, Mario Caccamo, and Daniel MacLean. (2013)

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs. PloS ONE, 8(3):e60058

April 2015

Proteomics, Silke Robatzek Group

Heard W, Sklenar J, Tome DF, Robatzek S, Jones AM (2015)

Identification of regulatory and cargo proteins of endosomal and secretory pathways in Arabidopsis thaliana by proteomic dissection. Mol Cell Proteomics. 2015 Apr 21.

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September 2015

Bioinformatics

Corredor-Moreno P, Chalstrey E, Lugo CA, MacLean D (2015)

Identification of Genomic Regions Carrying a Causal Mutation in Unordered Genomes. bioRxiv doi: http://dx.doi.org/10.1101/026856

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