Publications

March 2015

Bioinformatics

Etherington GJ, Ricardo H. Ramirez-Gonzalez RH, MacLean D (2015)

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby. Bioinformatics (2015) doi: 10.1093/bioinformatics/btv178

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February 2015

Proteomics, Sophien Kamoun Group

Petre B, Saunders DG, Sklenar J, Lorrain C, Win J, Duplessis S, Kamoun S (2015)

Candidate effector proteins of the rust pathogen Melampsora larici-populina target diverse plant cell compartments. Mol Plant Microbe Interact. 2015 Feb 4. [Epub ahead of print]

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January 2015

Bioinformatics

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM (2015)

An open science peer review oath. [v2; ref status: indexed, http://f1000r.es/4wf] F1000Research 2015, 3:271 (doi: 10.12688/f1000research.5686.2)

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January 2015

Bioinformatics, Cyril Zipfel Group

Etherington GJ, Monaghan J, Zipfel C, MacLean D (2014)

Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods 2014, 10:306. doi:10.1186/s13007-014-0041-7

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November 2014

Sophien Kamoun Group, Synthetic Biology

Belhaj K, Chaparro-Garcia A, Kamoun S, Patron NJ, Nekrasov V (2015)

Editing plant genomes with CRISPR/Cas9. Current Opinion in Biotechnology Volume 32, April 2015, Pages 76–84

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November 2014

Jonathan Jones Group, Proteomics

Caillaud MC, Wirthmueller L, Sklenar J, Findlay K, Piquerez SJ, Jones AM, Robatzek S, Jones JD, Faulkner C (2014)

The Plasmodesmal Protein PDLP1 Localises to Haustoria-Associated Membranes during Downy Mildew Infection and Regulates Callose Deposition. PLoS Pathog. 2014 Nov 13;10(11):e1004496. doi: 10.1371/journal.ppat.1004496.

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November 2014

Bioinformatics, Cyril Zipfel Group

Monaghan J, Matschi S, Shorinola O, Rovenich H, Matei A, Segonzac C, Gro Malinovsky F, Rathjen JP, MacLean D, Romeis T, Zipfel C (2014)

The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe (2014) Volume 16, p605–615. DOI: http://dx.doi.org/10.1016/j.chom.2014.10.007

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October 2014

Bioinformatics

Younsi R and MacLean D (2014)

Using 2k + 2 bubble searches to find Single Nucleotide Polymorphisms in k-mer graphs. Bioinformatics 2014 Oct 24. pii: btu706. [Epub ahead of print]

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October 2014

Jonathan Jones Group, Proteomics

Wirthmueller L, Roth C, Fabro G, Caillaud MC, Rallapalli G, Asai S, Sklenar J, Jones AM, Wiermer M, Jones JD, Banfield MJ. (2014)

Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector. Plant Journal (2014) doi: 10.1111/tpj.12691

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September 2014

Bioinformatics

Leggett RM and MacLean D (2014)

Reference-free SNP detection: dealing with the data deluge. BMC Genomics 2014, 15(Suppl 4):S10 doi:10.1186/1471-2164-15-S4-S10

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