Publications

June 2011

Bioinformatics

Etherington G and MacLean D (2011)

Next-Generation techniques for analysing Next-Generation sequence data (2011). GIT Laboratory Journal, 15, 11-12, pp 10-11

January 2011

Bioinformatics

John Walshaw, Graham J Etherington, and Dan MacLean (2011)

Next-generation sequencing approaches to metagenomics. page 63. Horizon Scientific Press

January 2015

Bioinformatics, Cyril Zipfel Group

Etherington GJ, Monaghan J, Zipfel C, MacLean D (2014)

Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods 2014, 10:306. doi:10.1186/s13007-014-0041-7

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September 2013

Bioinformatics, Sophien Kamoun Group

Cano, L.M., Raffaele, S., Haugen, R.H., Saunders, D.G.O., Leonelli, L., MacLean, D., Hogenhout, S.A., and Kamoun, S. 2013.

Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta. PLOS ONE, 8:e75293.

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July 2015

Bioinformatics, Sophien Kamoun Group

Rallapalli G, Fraxinus Players, Saunders DGO, Yoshida K, Edwards A, Lugo CA, Collin S, Clavijo B, Corpas M, Swarbreck D, Clark M, Downie JA, Kamoun S, Team Cooper, MacLean D (2015)

Lessons from Fraxinus, a crowd-sourced citizen science game in genomics. eLife 2015;4:e07460

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March 2013

Bioinformatics, Jonathan Jones Group

Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan DG Jones, Mario Caccamo, and Daniel MacLean. (2013)

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs. PloS ONE, 8(3):e60058

September 2015

Bioinformatics

Corredor-Moreno P, Chalstrey E, Lugo CA, MacLean D (2015)

Identification of Genomic Regions Carrying a Causal Mutation in Unordered Genomes. bioRxiv doi: http://dx.doi.org/10.1101/026856

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September 2010

Bioinformatics

Salomon, S., Grunewald, D., Stüber, K., Schaaf, S., MacLean, D., Schulze-Lefert, P. and Robatzek, S. (2010)

High throughput confocal imaging of intact live tissue enables quantification of membrane trafficking in Arabidopsis. Plant Physiol. 154: 1096-1104.

July 2008

Bioinformatics

Amanda J Cottage, Ellie K Mott, Jun-Hui Wang, James A Sullivan, Dan MacLean, Linh Tran, Mun-Kit Choy, Christine Newell, Tony A Kavanagh, Sue Aspinall, et al. (2008)

Gun1 (genomes uncoupled1) encodes a pentatricopep- tide repeat (ppr) protein involved in plastid protein synthesis-responsive retrograde signaling to the nucleus. In Photosynthesis. Energy from the Sun, pages 1201–1205. Springer Netherlands.

July 2010

Bioinformatics, Jonathan Jones Group

David J Studholme, Eric Kemen, Daniel MacLean, Sebastian Schornack, Valente Aritua, Richard Thwaites, Murray Grant, Julian Smith, and Jonathan DG Jones. (2010)

Genome-wide sequencing data reveals virulence factors implicated in banana xanthomonas wilt. FEMS Microbiology Letters, 310(2):182–192.