Publications

September 2014

Bioinformatics

Leggett RM and MacLean D (2014)

Reference-free SNP detection: dealing with the data deluge. BMC Genomics 2014, 15(Suppl 4):S10 doi:10.1186/1471-2164-15-S4-S10

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June 2018

Proteomics

Bi G, Zhou Z, Wang W, Li L, Rao S, Wu Y, Zhang X, Menke FLH, Chen S, Zhou J-M (2018)

Receptor-like Cytoplasmic Kinases Directly Link Diverse Pattern Recognition Receptors to the Activation of Mitogen-activated Protein Kinase Cascades in Arabidopsis. The Plant Cell Jun 2018, tpc.00981.2017; DOI: 10.1105/tpc.17.00981

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October 2018

Cyril Zipfel Group, Proteomics

Kadota Y, Liebrand TWH, Goto Y, Sklenar J, Derbyshire P, Menke FLH, Torres MA, Molina A, Zipfel C, Coaker G, Shirasu K (2018)

Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. New Phytol. 2018 Oct 9. doi: 10.1111/nph.15523.

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September 2017

Proteomics, Sophien Kamoun Group

Petre B, Win J, Menke FLH, Kamoun S (2017)

Protein-Protein Interaction Assays with Effector-GFP Fusions in Nicotiana benthamiana. Methods Mol Biol. 2017;1659:85-98. doi: 10.1007/978-1-4939-7249-4_8.

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October 2014

Jonathan Jones Group, Proteomics

Wirthmueller L, Roth C, Fabro G, Caillaud MC, Rallapalli G, Asai S, Sklenar J, Jones AM, Wiermer M, Jones JD, Banfield MJ. (2014)

Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector. Plant Journal (2014) doi: 10.1111/tpj.12691

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November 2016

Proteomics

Menke FLH (2016)

Plants get on PAR with poly(ADP‐ribosyl)ation. New & Views. EMBO reports (2016) e201643453. DOI 10.15252/embr.201643453

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March 2017

Bioinformatics, Cyril Zipfel Group

Bücherl CA, Jarsch IK, Schudoma C, Segonzac C, Mbengue M, Robatzek S, MacLean D, Ott T, Zipfel C (2017)

Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife 2017;10.7554/eLife.25114

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March 2009

Bioinformatics

Alexandra ME Jones, Daniel MacLean, David J Studholme, Antonio Serna-Sanz, Erik Andreasson, John P Rathjen, and Scott C Peck. (2009)

Phosphoproteomic analysis of nuclei-enriched fractions from arabidopsis thaliana. Journal of Proteomics, 72(3):439–451

May 2015

Proteomics

Mithoe SC, Menke FL (2015)

Phosphopeptide Immuno-Affinity Enrichment to Enhance Detection of Tyrosine Phosphorylation in Plants. Methods in Molecular Biology Volume 1306, 2015, pp 135-146

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September 2018

Cyril Zipfel Group, Proteomics

Perraki A, DeFalco TA, Derbyshire P, Avila J, Séré D, Sklenar J, Qi X, Stransfeld L, Schwessinger B, Kadota Y, Macho AP, Jiang S, Couto D, Torii KU, Menke FLH, Zipfel C (2018)

Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling. Nature, 3 Sept 2018. doi: 10.1038/s41586-018-0471-x

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