Publications

February 2012

Sophien Kamoun Group

Lu, Y.-J., Schornack, S., Spallek, T., Geldner, N., Chory, J., Schellmann, S., Schumacher, K., Kamoun, S., and Robatzek, S. 2012.

Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking. Cellular Microbiology, 14:682-697

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February 2012

Bioinformatics

Raoul JP Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Dan MacLean, Chase A Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, et al. (2012)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinformatics, 28(7):1035–1037

February 2012

Jonathan Jones Group

Bailey K, Cevik V, Holton N, Byrne-Richardson J, Sohn KH, Coates M, Woods-Tor A, Aksoy HM, Hughes L, Baxter L, Jones JD, Beynon J, Holub EB and Tor M (2011)

Molecular cloning of ATR5(Emoy2) from Hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis. Mol Plant Microbe Interact 24, 827-838.

February 2012

Jonathan Jones Group

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. (2012)

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

March 2012

Sophien Kamoun Group

Rietman, H., Bijsterbosch, G., Cano, L.M., Lee, H.-R., Vossen, J.H., Jacobsen, E., Visser, R.G.F., Kamoun, S., and Vleeshouwers, V.G.A.A. 2012.

Qualitative and quantitative late blight resistance in the potato cultivar Sarpo Mira is determined by the perception of five distinct RXLR effectors. Molecular Plant-Microbe Interactions, 25:910-919.

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April 2012

Cyril Zipfel Group

Roux M and Zipfel C (2012)

Receptor kinase interactions: complexity of signalling. In: F. Tax F and B. Kemmerling (eds.). Receptor-like Kinases in Plants, Signaling and Communication in Plants, 13: 145-172.

April 2012

Sophien Kamoun Group

Bozkurt, T.O., Schornack, S., Banfield, M.J., and Kamoun, S. 2012.

Oomycetes, effectors, and all that jazz. Current Opinion in Plant Biology, 15:483-492.

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April 2012

Frei dit Frey, N., Mbengue, M., Kwaaitaal, M., Nitsch, L., Altenbach, D., Häweker, H., Lozano-Duran, R., Njo, M.F., Beeckman, T., Huettel, B., Borst, J.W., Panstruga, R. and Robatzek, S. (2012)

Plasma membrane calcium ATPases are important components of receptor-mediated signalling in plant immune responses and development. Plant Physiol. 159: 798-809.

May 2012

Bioinformatics

Ricardo Ramirez-Gonzalez, Raoul JP Bonnal, Mario Caccamo, Daniel MacLean, et al. (2012)

Bio-samtools: Ruby bindings for samtools, a library for accessing bam files containing high-throughput sequence alignments. Source Code for Biology and Medicine, 7(6),

May 2012

Sophien Kamoun Group

Raffaele, S., and Kamoun, S. 2012.

Genome evolution in filamentous plant pathogens: why bigger can be better. Nature Reviews Microbiology, 10:417-430.

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