Publications

July 2011

Bioinformatics

Ricardo Ramirez-Gonzalez, Mario Caccamo, and Daniel MacLean (2011)

Gee fu: a sequence version and web-services database tool for genomic assembly, genome feature and ngs data. Bioinformatics, 27(19):2754–2755

August 2011

Sophien Kamoun Group

Win, J., Kamoun, S., and Jones, A.M. 2011.

Purification of effector-target protein complexes via transient expression in Nicotiana benthamiana. In “Plant Immunity: Methods and Protocols”, J.M. McDowell, ed. Methods in Molecular Biology, 712:181-194

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August 2011

Jonathan Jones Group

Robert-Seilaniantz A, Grant M, Jones JD. (2011)

Hormone crosstalk in plant disease and defense: more than just salicylate/jasmonate antagonism Annu Rev Phytopathol. 2011 49:317-43.

September 2011

Sophien Kamoun Group

Vleeshouwers, V.G.A.A., Raffaele, R., Vossen, J., Champouret, N., Oliva, R., Segretin, M.E., Rietman, H., Cano, L.M., Lokossou, A., Kessel, G., Pel, M.A., and Kamoun, S. 2011.

Understanding and exploiting late blight resistance in the age of effectors. Annual Reviews of Phytopathology, 49:507-531.

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September 2011

Bioinformatics

Dent Earl, Keith Bradnam, John St John, Aaron Darling, Dawei Lin, Joseph Fass, Hung On Ken Yu, Vince Buffalo, Daniel R Zerbino, Mark Diekhans, et al.

Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research, 21(12):2224–2241

October 2011

Sophien Kamoun Group

Boutemy, L.S., King, S.R.F., Win, J., Hughes, R.K., Clarke, T.A., Blumenschein, T.M.A., Kamoun, S., and Banfield, M.J. 2011.

Structures of Phytophthora RXLR effector proteins: a conserved but adaptable fold underpins functional diversity. Journal of Biological Chemistry, 41:35834-35842.

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October 2011

Jonathan Jones Group

Grierson CS, Barnes SR, Chase MW, Clarke M, Grierson D, Edwards KJ, Jellis GJ, Jones JD, Knapp S, Oldroyd G, Poppy G, Temple P, Williams R, Bastow R.

One hundred important questions facing plant science research (2011) New Phytol. 192(1):6-12.

October 2011

Jonathan Jones Group

Wirthmueller L, Jones JD, Banfield MJ (2011)

Crystallization and preliminary X-ray diffraction analysis of the RxLR-type effector RxLR3 from the oomycete pathogen Hyaloperonospora arabidopsidis (2011). Acta Crystallogr Sect F Struct Biol Cryst Commun. 67(Pt 11):1417-20.

November 2011

Sophien Kamoun Group

van Damme, M., Cano, L. M., Oliva, R., Schornack, S., Segretin, M. E., Kamoun, S. and Raffaele, S. 2011.

Evolutionary and Functional Dynamics of Oomycete Effector Genes, in Effectors in Plant-Microbe Interactions (eds F. Martin and S. Kamoun), Wiley-Blackwell, Oxford, UK. doi: 10.1002/9781119949138.ch5

November 2011

Matthew Moscou Group

Muñoz-Amatriaín, M.*, Moscou, M.J.*, Bhat, P.R., Svensson, J.T., Bartoš, J., Suchánková, P., Šimková, H., Endo, T.R., Fenton, R. D., Wu, Y., Lonardi, S., Castillo, A.M., Chao, S., Cistué, L., Cuesta-Marcos, A., Forrest, K., Hayden, M.J., Hayes, P.M., Horsley, R.D., Kleinhofs, A., Moody, D., Sato, K., Vallés, M.P., Wulff, B.B.H., Muehlbauer, G.J., Doležel, J., and Close, T.J. (2011)

An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers. The Plant Genome. 4(3): 238-249.

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