Publications

June 2019

Cyril Zipfel Group, Proteomics

Wong JEMM, Nadzieja M, Madsen LH, Bücherl CA, Dam S, Sandal NN, Couto D, Derbyshire P, Uldum-Berentsen M, Schroeder S, Schwämmle V, Nogueira FCS, Asmussen MH, Thirup S, Radutoiu S, Blaise M, Andersen KR, Menke FLH, Zipfel C, Stougaard J (2019)

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proc Natl Acad Sci U S A. 2019 Jun 25. pii: 201815425. doi: 10.1073/pnas.1815425116.

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March 2014

Cyril Zipfel Group, Proteomics

Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S, Kadota Y, Oh MH, Sklenar J, Derbyshire P, Lozano-Duran R, Gro Malinovsky F, Monaghan J, Menke FL, Huber SC, He SY and Zipfel C (2014)

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation. Science, 343 (6178): 1509-1512.

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October 2006

Jonathan Jones Group

Nomura ,K, DebRoy, S, Lee, YH Pumplin, N Jones, JDG, He, SH (2006)

A Bacterial Virulence Protein Suppresses Host Innate Immunity to Cause Plant Disease. Science 313:220-3

February 2010

Bioinformatics

Daniel MacLean and David J Studholme. (2010)

A boolean model of the pseudomonas syringae hrp regulon predicts a tightly regulated system. PloS ONE, 5(2):e9101.

December 2012

Sophien Kamoun Group

Wang, E., Schornack, S., Marsh, J.F., Gobbato, E., Schwessinger, B., Eastmond, P., Schultze, M., Kamoun, S., and Oldroyd, G.E.D. 2012.

A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Current Biology, 22:2242-2246.

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July 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant J. 2017 Jul 25. doi: 10.1111/tpj.13640.

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September 2017

Woolfenden HC, Bourdais G, Kopischke M, Miedes E, Molina A, Robatzek S, Morris RJ (2017)

A computational approach for inferring the cell wall properties that govern guard cell dynamics. Plant Journal 92, 5-18.

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May 2019

Bioinformatics

MacLean D (2019)

A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions. bioRxiv preprint Apr 28, 2019 doi: https://doi.org/10.1101/618926

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September 2009

Cyril Zipfel Group, Jonathan Jones Group

Li J, Chu ZH, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C and Jones JDG (2009)

A dedicated subset of ER quality control components required for plant innate immunity. Proc. Natl. Acad. Sci. USA 106: 15973-15978.

January 2013

Fitzgibbon, J., Beck, M., Zhou, J., Faulkner, C., Robatzek, S. and Oparka, K. (2013)

A developmental framework for complex plasmodesmata formation revealed by large-scale imaging of the Arabidopsis leaf epidermis. Plant Cell. 25: 57-70.