Publications

August 2009

Bioinformatics

David J Studholme, Selena G Ibanez, Daniel MacLean, Jeffery L Dangl, Jeff H Chang, and John P Rathjen (2009)

A draft genome sequence and functional screen reveals the repertoire of type iii secreted proteins of pseudomonas syringae pathovar tabaci 11528. BMC Genomics, 10(1):395

August 2009

Bioinformatics

Nalvo F Almeida, Shuangchun Yan, Magdalen Lindeberg, David J Studholme, David J Schneider, Bradford Condon, Haijie Liu, Carlos J Viana, Andrew Warren, Clive Evans, et al. (2009)

A draft genome sequence of pseudomonas syringae pv. tomato t1 reveals a type iii effector repertoire sig-nificantly divergent from that of pseudomonas syringae pv. tomato dc3000. Molecular Plant-Microbe Interactions, 22(1):52–62

January 2010

Bioinformatics

Pawel Durek, Robert Schmidt, Joshua L Heazlewood, Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, and Waltraud X Schulze. (2010)

Phosphat: the arabidopsis thaliana phosphorylation site database. an up- date. Nucleic Acids Research, 38(suppl 1):D828–D834

February 2010

Bioinformatics

Daniel MacLean and David J Studholme. (2010)

A boolean model of the pseudomonas syringae hrp regulon predicts a tightly regulated system. PloS ONE, 5(2):e9101.

February 2010

Bioinformatics

Daniel MacLean, Vincent Moulton, and David J Studholme. (2010)

Finding srna generative locales from high-throughput sequencing data with nibls. BMC Bioinformatics, 11(1):93,

March 2010

Bioinformatics

Daniel MacLean, Nataliya Elina, Ericka R Havecker, Susanne B Heim- staedt, David J Studholme, and David C Baulcombe. (2010)

Evidence for large complex networks of plant short silencing rnas. PLoS One, 5(3):e9901

July 2010

Bioinformatics, Jonathan Jones Group

David J Studholme, Eric Kemen, Daniel MacLean, Sebastian Schornack, Valente Aritua, Richard Thwaites, Murray Grant, Julian Smith, and Jonathan DG Jones. (2010)

Genome-wide sequencing data reveals virulence factors implicated in banana xanthomonas wilt. FEMS Microbiology Letters, 310(2):182–192.

August 2010

Bioinformatics

MG Lewsey, AM Murphy, D MacLean, N Dalchau, J Westwood, K Macaulay, MH Bennett, M Moulin, DE Hanke, G Powell, et al. (2010)

Disruption of the salicylate and jasmonate signaling pathways by the cucumber mosaic virus 2b rna silencing suppressor. In PHYTOPATHOLOGY, volume 100, pages S70–S70

August 2010

Bioinformatics

Sylviane Comparot-Moss, Oliver Kotting, Michaela Stettler, Christoph Edner, Alexander Graf, Sean E Weise, Sebastian Streb, Wei-Ling Lue, Daniel MacLean, Sebastian Mahlow, et al. (2010)

A putative phosphatase, lsf1, is required for normal starch turnover in arabidopsis leaves. Plant Physiology, 152(2):685–697

September 2010

Bioinformatics, Silke Robatzek Group

Salomon, S., Grunewald, D., Stüber, K., Schaaf, S., MacLean, D., Schulze-Lefert, P. and Robatzek, S. (2010)

High throughput confocal imaging of intact live tissue enables quantification of membrane trafficking in Arabidopsis. Plant Physiol. 154: 1096-1104.