De la Concepcion JC, Franceschetti M, MacLean D, Terauchi R, Kamoun S, Banfield MJ (2019)
Protein engineering expands the effector recognition profile of a rice NLR immune receptor. Elife. 2019 Sep 19;8. pii: e47713. doi: 10.7554/eLife.47713.
Publications
MacLean D (2019)
A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions. bioRxiv preprint Apr 28, 2019 doi: https://doi.org/10.1101/618926
Rallapalli G, Corredor-Moreno P, Chalstrey E, Page M, MacLean D (2019)
Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. BMC Bioinformatics. 2019 Jan 7;20(1):9. doi: 10.1186/s12859-018-2515-5.
Bourdais G, McLachlan DH, Rickett LM, Zhou J, Siwoszek A, Häweker H, Hartley M, Kuhn H, Morris RJ, MacLean D, Robatzek S (2018)
The use of quantitative imaging to investigate regulators of membrane trafficking in Arabidopsis stomatal closure. Traffic. 2018 Nov 16. doi: 10.1111/tra.12625.
Wirthmueller L, Asai S, Rallapalli G, Sklenar J, Fabro G, Kim DS, Lintermann R, Jaspers P, Wrzaczek M, Kangasjärvi J, MacLean D, Menke FLH, Banfield MJ, Jones JDG (2018)
Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1. New Phytol. 2018 Oct;220(1):232-248. doi: 10.1111/nph.15277.
Toda Y, Toh S, Bourdais G, Robatzek S, Maclean D, Kinoshita T (2018)
DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement. bioRxiv preprint Jul 9, 2018 doi: https://doi.org/10.1101/365098
Shrestha RK, Ding P, Jones JDG, MacLean D (2018)
A workflow for simplified analysis of ATAC-cap-seq data in R. GigaScience, 2017, 1–7. DOI: 10.1093/gigascience/giy080
Tomlinson L, Yang Y, Emenecker R, Smoker M, Taylor J, Perkins S, Smith J, MacLean D, Olszewski NE, Jones JDG (2018)
Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele. Plant Biotechnol J. 2018 May 24. doi: 10.1111/pbi.12952.
McMullan M, Rafiqi M, Kaithakottil G, Clavijo BJ, Bilham L, Orton E, Percival-Alwyn L, Ward BJ, Edwards A, Saunders DGO, Garcia Accinelli G, Wright J, Verweij W, Koutsovoulos G, Yoshida K, Hosoya T, Williamson L, Jennings P, Ioos R, Husson C, Hietala AM, Vivian-Smith A, Solheim H, MacLean D, Fosker C, Hall N, Brown JKM, Swarbreck D, Blaxter M, Downie JA, Clark MD (2018)
The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nat Ecol Evol. 2018 Apr 23. doi: 10.1038/s41559-018-0548-9.
Faulkner C, Zhou J, Evrard A, Bourdais G, MacLean D, Häweker H, Eckes P, Robatzek S (2017)
An automated quantitative image analysis tool for the identification of microtubule patterns in plants. Traffic. 2017 Jul 26. doi: 10.1111/tra.12505.