Publications

September 2014

Jonathan Jones Group

Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P. (2014)

Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life. Cell Host & Microbe 16: 364 – 375 (2014) DOI: http://dx.doi.org/10.1016/j.chom.2014.08.004

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October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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February 2012

Jonathan Jones Group

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. (2012)

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

July 2018

Sophien Kamoun Group

Langner T, Kamoun S, Belhaj K (2018)

CRISPR Crops: Plant Genome Editing Toward Disease Resistance. Annu Rev Phytopathol. 2018 Jul 5. doi: 10.1146/annurev-phyto-080417-050158.

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September 2018

Nick Talbot Group

Foster AJ, Martin-Urdiroz M, Yan X, Wright HS, Soanes DM, Talbot NJ (2018)

CRISPR-Cas9 ribonucleoprotein-mediated co-editing and counterselection in the rice blast fungus. Sci Rep. 2018 Sep 25;8(1):14355. doi: 10.1038/s41598-018-32702-w.

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July 2012

Göhre, V., Jones, A.M.E., Sklenář, J., Robatzek, S. and Weber, A.P.M. (2012)

Crosstalk between PAMP-triggered immunity and photosynthesis. Mol. Plant Microbe Interact. 25: 1083-1092.

April 2014

Bioinformatics, Sophien Kamoun Group

Saunders, D., Yoshida, K., Sambles, C., Glover, R., Clavijo, B., Corpas, M., Bunting, D., Dong, S., Clark, M., Swarbreck, D., Ayling, S., Bashton, M., Collin, S., Hosoya, T., Edwards, A., Crossman, L., Etherington, G., Win, J., Cano, L., Studholme, D., Downie, J.A., Caccamo, M., Kamoun, S., and MacLean, D. (2014)

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. bioRxiv, 5:98.

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April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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October 2011

Jonathan Jones Group

Wirthmueller L, Jones JD, Banfield MJ (2011)

Crystallization and preliminary X-ray diffraction analysis of the RxLR-type effector RxLR3 from the oomycete pathogen Hyaloperonospora arabidopsidis (2011). Acta Crystallogr Sect F Struct Biol Cryst Commun. 67(Pt 11):1417-20.

June 2018

Jonathan Jones Group

Ding P, Guo H, Jones JDG (2018)

Deadlier than the malate. Cell Res. 2018 May 29. doi: 10.1038/s41422-018-0042-6.