Publications

April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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April 2014

Bioinformatics, Sophien Kamoun Group

Saunders, D., Yoshida, K., Sambles, C., Glover, R., Clavijo, B., Corpas, M., Bunting, D., Dong, S., Clark, M., Swarbreck, D., Ayling, S., Bashton, M., Collin, S., Hosoya, T., Edwards, A., Crossman, L., Etherington, G., Win, J., Cano, L., Studholme, D., Downie, J.A., Caccamo, M., Kamoun, S., and MacLean, D. (2014)

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. bioRxiv, 5:98.

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July 2019

Sophien Kamoun Group

Varden FA, Saitoh H, Yoshino K, Franceschetti M, Kamoun S, Terauchi R, Banfield MJ (2019)

Cross-reactivity of a rice NLR immune receptor to distinct effectors from the rice blast pathogen Magnaporthe oryzae provides partial disease resistance. J Biol Chem. 2019 Jul 11. pii: jbc.RA119.007730. doi: 10.1074/jbc.RA119.007730.

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January 2019

Sophien Kamoun Group

Varden FA, Saitoh H, Yoshino K, Franceschetti M, Kamoun S, Terauchi R, Banfield MJ (2019)

Cross-reactivity of a rice NLR immune receptor to distinct effectors from the blast pathogen leads to partial disease resistance. bioRxiv preprint Jan 25, 2019 doi: https://doi.org/10.1101/530675

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July 2018

Sophien Kamoun Group

Langner T, Kamoun S, Belhaj K (2018)

CRISPR Crops: Plant Genome Editing Toward Disease Resistance. Annu Rev Phytopathol. 2018 Jul 5. doi: 10.1146/annurev-phyto-080417-050158.

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October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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September 2015

Sophien Kamoun Group

Yoshida K, Sasaki E, Kamoun S (2015)

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects. Front. Plant Sci. | doi: 10.3389/fpls.2015.00771

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January 2010

Sophien Kamoun Group

Green, S., Studholme, D.J., Laue, B.E., Dorati, F., Lovell, H., Arnold, D., Cottrell, J.E., Bridgett, S., Blaxter, M., Huitema, E., Thwaites, R., Sharp, P.M., Jackson, R.W., and Kamoun, S. 2010.

Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS ONE, 5:e10224.

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April 2008

Sophien Kamoun Group

Grant, M., and Kamoun, S. 2008.

Common threads amid diversity. Current Opinion in Plant Biology, 11:357-359.

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February 2016

Sophien Kamoun Group

Petre B, Kopischke M, Evrard A, Robatzek S, Kamoun S (2016)

Cell re-entry assays do not support models of pathogen-independent translocation of AvrM and AVR3a effectors into plant cells. bioRxiv preprint January 29, 2016 doi: http://dx.doi.org/10.1101/038232

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