Publications

October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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February 2012

Jonathan Jones Group

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. (2012)

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

July 2012

Silke Robatzek Group

Göhre, V., Jones, A.M.E., Sklenář, J., Robatzek, S. and Weber, A.P.M. (2012)

Crosstalk between PAMP-triggered immunity and photosynthesis. Mol. Plant Microbe Interact. 25: 1083-1092.

April 2014

Bioinformatics, Sophien Kamoun Group

Saunders, D., Yoshida, K., Sambles, C., Glover, R., Clavijo, B., Corpas, M., Bunting, D., Dong, S., Clark, M., Swarbreck, D., Ayling, S., Bashton, M., Collin, S., Hosoya, T., Edwards, A., Crossman, L., Etherington, G., Win, J., Cano, L., Studholme, D., Downie, J.A., Caccamo, M., Kamoun, S., and MacLean, D. (2014)

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. bioRxiv, 5:98.

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April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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October 2011

Jonathan Jones Group

Wirthmueller L, Jones JD, Banfield MJ (2011)

Crystallization and preliminary X-ray diffraction analysis of the RxLR-type effector RxLR3 from the oomycete pathogen Hyaloperonospora arabidopsidis (2011). Acta Crystallogr Sect F Struct Biol Cryst Commun. 67(Pt 11):1417-20.

April 2011

Cyril Zipfel Group

Batoux M, Lacombe S, Li J, Morehouse K, Nekrasov V, Nicaise V, Niebergall R, Rougon A, Roux M, Schwessinger B, Westedt I, and Zipfel C (2010)

Deciphering PAMP-triggered immunity in Arabidopsis. In: Antoun H, Avis T, Brisson L, Prevost D and Trepanier M (ed). International Society for Molecular Plant-Microbe Interactions, St. Paul, Minnesota. Biology of Plant-Microbe Interactions, 7.

May 2014

Jonathan Jones Group

Andolfo G, Jupe F, Witek K, Etherington GJ, Ercolano MR and Jones JDG (2014)

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq. BMC Plant Biology 2014, 14:120 doi:10.1186/1471-2229-14-120

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December 2016

Matthew Moscou Group

Clare S, Kitcher W, Gardiner M, Green P, Hubbard A, Moscou MJ (2016)

Defining the genetic architecture of stripe rust resistance in the barley accession HOR 1428. bioRxiv preprint December 13, 2016 doi: http://dx.doi.org/10.1101/09377

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May 2008

Jonathan Jones Group

Navarro L, Bari R, Achard P, Lisón P, Nemri A, Harberd NP, Jones JD. (2008)

DELLAs control plant immune responses by modulating the balance of jasmonic acid and salicylic acid signaling. Curr Biol. 2008 May 6;18(9):650-5. PubMed PMID: 18450451.