Publications

August 2017

Jonathan Jones Group

Giolai M, Paajanen P, Verweij W, Witek K, Jones JDG, Clark M (2017)

Comparative analysis of targeted long read sequencing approaches for characterization of a plant’s immune receptor repertoire. BMC Genomics. 2017 Jul 26;18(1):564. doi: 10.1186/s12864-017-3936-7.

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January 2010

Sophien Kamoun Group

Green, S., Studholme, D.J., Laue, B.E., Dorati, F., Lovell, H., Arnold, D., Cottrell, J.E., Bridgett, S., Blaxter, M., Huitema, E., Thwaites, R., Sharp, P.M., Jackson, R.W., and Kamoun, S. 2010.

Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS ONE, 5:e10224.

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July 2015

Jonathan Jones Group

Trantas EA, Licciardello G, Almeida NF, Witek K, Strano CP, Duxbury Z, Ververidis F, Goumas DE, Jones JD, Guttman DS, Catara V, Sarris PF (2015)

Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front. Microbiol. | doi: 10.3389/fmicb.2015.00811

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September 2017

Anderson JP, Sperschneider J, Win J, Kidd B, Yoshida K, Hane J, Saunders DGO, Singh KB (2017)

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors. Sci Rep. 2017 Sep 5;7(1):10410. doi: 10.1038/s41598-017-10405-y.

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December 2017

Cyril Zipfel Group

Stegmann M, Zipfel C (2017)

Complex regulation of plant sex by peptides. Science: Vol. 358, Issue 6370, pp. 1544-1545 DOI: 10.1126/science.aar4190

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July 2014

Ahkami A, Scholz U, Steuernagel B, Strickert M, Haensch KT, Druege U, Reinhardt D, Nouri E, von Wirén N, Franken P, Hajirezaei MR. (2014)

Comprehensive transcriptome analysis unravels the existence of crucial genes regulating primary metabolism during adventitious root formation in Petunia hybrida. PLoS One. 2014 Jun 30;9(6):e100997. doi: 10.1371/journal.pone.0100997. eCollection 2014. PubMed PMID: 24978694; PubMed Central PMCID: PMC4076263.

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September 2015

Sophien Kamoun Group

Yoshida K, Sasaki E, Kamoun S (2015)

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects. Front. Plant Sci. | doi: 10.3389/fpls.2015.00771

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September 2009

Cyril Zipfel Group, Jonathan Jones Group

Nekrasov V, Li J, Batoux M, Roux M, Lacombe S, Rougon A, Chu ZH, Bittel P, Kiss-Papp M, Chinchilla D, van Esse HP, Jorda L, Schwessinger B, Nicaise V, Thomma BPHJ, Molina A, Jones JDG and Zipfel C (2009)

Control of the pattern recognition receptor EFR by an ER protein complex in plant immunity. EMBO Journal 28: 3428-3438.

September 2014

Jonathan Jones Group

Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P. (2014)

Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life. Cell Host & Microbe 16: 364 – 375 (2014) DOI: http://dx.doi.org/10.1016/j.chom.2014.08.004

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October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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