Publications

April 2013

Bioinformatics, Sophien Kamoun Group

MacLean, D., Yoshida, K., Edwards, A., Crossman, L., Clavijo, B., Clark, M., Swarbreck, D., Bashton, M., Chapman, P., Gijzen, M., Caccamo, M., Downie, A., Kamoun, S., and Saunders, D. 2013.

Crowdsourcing genomic analyses of ash and ash dieback — power to the people. GigaScience, 2:2.

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April 2014

Bioinformatics, Sophien Kamoun Group

Saunders, D., Yoshida, K., Sambles, C., Glover, R., Clavijo, B., Corpas, M., Bunting, D., Dong, S., Clark, M., Swarbreck, D., Ayling, S., Bashton, M., Collin, S., Hosoya, T., Edwards, A., Crossman, L., Etherington, G., Win, J., Cano, L., Studholme, D., Downie, J.A., Caccamo, M., Kamoun, S., and MacLean, D. (2014)

Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. bioRxiv, 5:98.

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July 2018

Sophien Kamoun Group

Langner T, Kamoun S, Belhaj K (2018)

CRISPR Crops: Plant Genome Editing Toward Disease Resistance. Annu Rev Phytopathol. 2018 Jul 5. doi: 10.1146/annurev-phyto-080417-050158.

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October 2013

Bioinformatics, Sophien Kamoun Group

Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., and Terauchi, R. 2013.

Coval: Improving alignment quality and variant calling accuracy for next-generation sequencing data. PLOS ONE, 8:e75402.

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September 2015

Sophien Kamoun Group

Yoshida K, Sasaki E, Kamoun S (2015)

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects. Front. Plant Sci. | doi: 10.3389/fpls.2015.00771

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January 2010

Sophien Kamoun Group

Green, S., Studholme, D.J., Laue, B.E., Dorati, F., Lovell, H., Arnold, D., Cottrell, J.E., Bridgett, S., Blaxter, M., Huitema, E., Thwaites, R., Sharp, P.M., Jackson, R.W., and Kamoun, S. 2010.

Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS ONE, 5:e10224.

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April 2008

Sophien Kamoun Group

Grant, M., and Kamoun, S. 2008.

Common threads amid diversity. Current Opinion in Plant Biology, 11:357-359.

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February 2016

Sophien Kamoun Group

Petre B, Kopischke M, Evrard A, Robatzek S, Kamoun S (2016)

Cell re-entry assays do not support models of pathogen-independent translocation of AvrM and AVR3a effectors into plant cells. bioRxiv preprint January 29, 2016 doi: http://dx.doi.org/10.1101/038232

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September 2018

Nick Talbot Group, Sophien Kamoun Group

Gupta DR, Avila CR, Win J, Soanes DM, Ryder LS, Croll D, Bhattacharjee P, Hossain MS, Mahmud NU, Mehebub MS, Surovy MZ, Rahman MM, Talbot N, Kamoun S, Islam MT (2018)

Cautionary Notes on Use of the MoT3 Diagnostic Assay for Magnaporthe oryzae Wheat and Rice Blast Isolates. Phytopathology. 2018 Sep 25. doi: 10.1094/PHYTO-06-18-0199-LE.

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January 2008

Sophien Kamoun Group

Oh, S.-K., Baek, K.-H., Park, J.M., Yi, S.Y., Yu, S.H., Kamoun, S., and Choi, D. 2008.

Capsicum annuum WRKY protein CaWRKY1 is a negative regulator of pathogen defense. New Phytologist, 177:977-989.

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