Publications

March 2015

Bioinformatics

Etherington GJ, Ricardo H. Ramirez-Gonzalez RH, MacLean D (2015)

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby. Bioinformatics (2015) doi: 10.1093/bioinformatics/btv178

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May 2012

Bioinformatics

Ricardo Ramirez-Gonzalez, Raoul JP Bonnal, Mario Caccamo, Daniel MacLean, et al. (2012)

Bio-samtools: Ruby bindings for samtools, a library for accessing bam files containing high-throughput sequence alignments. Source Code for Biology and Medicine, 7(6),

January 2016

Abd-El-Haliem A, Vossen JH, van Zeijl A, Dezhsetan S, Testerink C, Seidl MF, Beck M, Strutt J, Robatzek S, Joosten MHAJ (2016)

Biochemical characterization of the tomato phosphatidylinositol-specific phospholipase C (PI-PLC) family and its role in plant immunity. Biochimica et Biophysica Acta (BBA) – Molecular and Cell Biology of Lipids doi:10.1016/j.bbalip.2016.01.017

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February 2012

Bioinformatics

Raoul JP Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Dan MacLean, Chase A Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, et al. (2012)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinformatics, 28(7):1035–1037

October 2018

Armitage AD, Lysøe E, Nellist CF, Lewis LA, Cano LM, Harrison RJ, Brurberg MB (2018)

Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PLoS One. 2018 Oct 2;13(10):e0202305. doi: 10.1371/journal.pone.0202305.

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January 2009

Bioinformatics

Dan MacLean and David J Studholme (2009)

Bioinformatics aspects of high-throughput sequencing technology. In Plant Pathogenic Bacteria: Genomics and Molecular Biology, page 311. Horizon Scientific Press

July 2012

Bioinformatics

GJ Etherington and D MacLean. (2012)

Bioinformatik-analyse von next generation-sequenzierungsdaten. BIOforum-Forschung und Entwicklung, 35(1):34

March 2016

Bioinformatics

Page M, MacLean D, Schudoma C (2016)

blastjs: a BLAST+ wrapper for Node.js. BMC Research Notes (2016) 9:130 doi: 10.1186/s13104-016-1938-1

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June 2016

Synthetic Biology

Patron NJ (2016)

Blueprints for green biotech: development and application of standards for plant synthetic biology. Biochem Soc Trans. 44:702-8. doi: 10.1042/BST20160044.

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September 2019

Jonathan Jones Group

Jones JDG (2019)

Book Review: The curious case of the bacterial engineer. Nat Plants. 2019 Sep 2. doi: 10.1038/s41477-019-0516-7.

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