Publications

March 2009

Bioinformatics

Alexandra ME Jones, Daniel MacLean, David J Studholme, Antonio Serna-Sanz, Erik Andreasson, John P Rathjen, and Scott C Peck. (2009)

Phosphoproteomic analysis of nuclei-enriched fractions from arabidopsis thaliana. Journal of Proteomics, 72(3):439–451

February 2009

Bioinformatics, Jonathan Jones Group

Daniel MacLean, Jonathan DG Jones, and David J Studholme. (2009)

Application of ’next-generation’ sequencing technologies to microbial genetics. Nature Reviews Microbiology, 7(4):287–296

January 2009

Bioinformatics

Dan MacLean and David J Studholme (2009)

Bioinformatics aspects of high-throughput sequencing technology. In Plant Pathogenic Bacteria: Genomics and Molecular Biology, page 311. Horizon Scientific Press

August 2008

Bioinformatics

Simon Moxon, Frank Schwach, Tamas Dalmay, Dan MacLean, David J Studholme, and Vincent Moulton (2008)

A toolkit for analysing large-scale plant small rna datasets. Bioinformatics, 24(19):2252–2253,

July 2008

Bioinformatics

Amanda J Cottage, Ellie K Mott, Jun-Hui Wang, James A Sullivan, Dan MacLean, Linh Tran, Mun-Kit Choy, Christine Newell, Tony A Kavanagh, Sue Aspinall, et al. (2008)

Gun1 (genomes uncoupled1) encodes a pentatricopep- tide repeat (ppr) protein involved in plastid protein synthesis-responsive retrograde signaling to the nucleus. In Photosynthesis. Energy from the Sun, pages 1201–1205. Springer Netherlands.

June 2008

Bioinformatics

Daniel MacLean, Michael A Burrell, David J Studholme, and Alexandra ME Jones. (2008)

Phoscalc: a tool for evaluating the sites of peptide phos- phorylation from mass spectrometer data. BMC Research Notes, 1(1):30, 2008.

March 2008

Bioinformatics

Daniel MacLean, Cheryl A Jerome, Anthony PC Brown, and John C Gray. (2008)

Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and arabidopsis. Plant Molecular Biology, 66(5):475–490

March 2008

Bioinformatics, Jonathan Jones Group

Harrold A van den Burg, Dimitrios I Tsitsigiannis, Owen Rowland, Jane Lo, Ghanasyam Rallapalli, Daniel MacLean, Frank LW Takken, and Jonathan DG Jones. (2008)

The f-box protein acre189/acif1 regulates cell death and defense responses activated during pathogen recognition in tobacco and tomato. The Plant Cell Online, 20(3):697–719