Publications

October 2018

Proteomics, Sophien Kamoun Group

Zess EK, Jensen C, Cruz-Mireles N, De la Concepcion JC, Sklenar J, Imre R, Roitinger E, Hughes R, Belhaj K, Mechtler K, Menke F, Bozkurt T, Banfield M, Kamoun S, Maqbool A, Dagdas Y (2018)

N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. bioRxiv preprint Oct 25, 2018 doi: https://doi.org/10.1101/453563

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May 2013

Sophien Kamoun Group

Takagi, H., Uemura, A., Yaegashi, H., Tamiru, M., Abe, A., Mitsuoka, C., Utsushi, H., Natsume, S., Kanzaki, H., Matsumura, H., Saitoh, H., Yoshida, K., Cano, L.M., Kamoun, S., Terauchi, R. 2013.

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii. New Phytologist, 200:276-283.

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July 2013

Sophien Kamoun Group

Fekih, R., Takagi, H., Tamiru, M., Abe, A., Natsume, S., Yaegashi, H., Sharma, S., Sharma, S., Kanzaki, H., Matsumura, H., Saitoh, H., Mitsuoka, C., Utsushi, H., Uemura, A., Kanzaki, E., Kosugi, S., Yoshida, K., Cano. L., Kamoun, S., and Terauchi, R. 2013.

MutMap+: Genetic mapping and mutant identification without crossing in rice. PLOS ONE, 8:e68529.

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March 2015

Sophien Kamoun Group

Takagi H, Tamiru M, Abe A, Yoshida K, Uemura A, Yaegashi H, Obara T, Oikawa K, Utsushi H, Kanzaki E, Mitsuoka C, Natsume S, Kosugi S, Kanzaki H, Matsumura H, Urasaki N, Kamoun S, Terauchi R (2015)

MutMap accelerates breeding of a salt-tolerant rice cultivar. Nature Biotechnology (2015) doi:10.1038/nbt.3188

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April 2014

Sophien Kamoun Group

Lee, H.A., Kim, S.Y., Oh, S.K., Yeom, S.I., Kim, S.B., Kim, M.S., Kamoun, S., and Choi, D. (2014)

Multiple recognition of RXLR effectors is associated with nonhost resistance of pepper against Phytophthora infestans. New Phytologist, in press.

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April 2014

Sophien Kamoun Group

Yoshida, K., Burbano, H.A., Krause, J., Thines, M., Weigel, D., and Kamoun, S. (2014)

Mining herbaria for plant pathogen genomes: back to the future. PLOS Pathogens, 10:e1004028.

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August 2012

Sophien Kamoun Group

Youle, M., Rohwer, F., Whiteley, M., Steel, B.C., Delalez, N.J., Nord, A.L., Berry, R.M., Armitage, J.P., Kamoun, S., Hogenhout, S., Diggle, S. P., Gurney, J., Pollitt, E. J. G., Boetius, A. and Cary, S. C. 2012.

Microbial Olympics. Nature Reviews Microbiology, 10:583-588.

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September 2013

Bioinformatics, Sophien Kamoun Group

Cano, L.M., Raffaele, S., Haugen, R.H., Saunders, D.G.O., Leonelli, L., MacLean, D., Hogenhout, S.A., and Kamoun, S. 2013.

Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta. PLOS ONE, 8:e75293.

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August 2017

Sophien Kamoun Group

Bialas A, Zess EK, De la Concepcion JC, Franceschetti M, Pennington HG, Yoshida K, Upson JL, Chanclud E, Wu C-H, Langner T, Maqbool A, Varden FA, Derevnina L, Belhaj K, Fujisaki K, Saitoh H, Terauchi R, Banfield MJ, Kamoun S (2017)

Lessons in effector and NLR biology of plant-microbe systems. bioRxiv preprint Aug 2, 2017 doi: https://doi.org/10.1101/171223

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July 2015

Bioinformatics, Sophien Kamoun Group

Rallapalli G, Fraxinus Players, Saunders DGO, Yoshida K, Edwards A, Lugo CA, Collin S, Clavijo B, Corpas M, Swarbreck D, Clark M, Downie JA, Kamoun S, Team Cooper, MacLean D (2015)

Lessons from Fraxinus, a crowd-sourced citizen science game in genomics. eLife 2015;4:e07460

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