Publications

August 2009

Bioinformatics, Jonathan Jones Group, Sophien Kamoun Group

Haas, B.J., Kamoun, S., Zody, M.C., Jiang, R.H.Y., Handsaker, R.E., Cano, L.M., Grabherr, M., Kodira, C.D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T.O., Ah-Fong, A.M.V., Alvarado, L., Anderson, V.L., Armstrong, M.R., Avrova, A., Baxter, L., Beynon, J., Boevink, P.C., Bollmann, S.R., Bos, J.I.B., Bulone, V., Cai, G., Cakir, C., Carrington, J.C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M.A., Fugelstad, J., Gilroy, E.M., Gnerre, S., Green, P.J., Grenville-Briggs, L.J., Griffith, J., Grunwald, N.J., Horn, K., Horner, N.R., Hu, C.-H., Huitema, E., Jeong, D.-H., Jones, A.M.E., Jones, J.D.G., Jones, R.W., Karlsson, E.K., Kunjeti, S.G., Lamour, K., Liu, Z., Ma, L., MacLean, D., Chibucos, M.C., McDonald, H., McWalters, J., Meijer, H.J.G., Morgan, W., Morris, P.F., Munro, C.A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D.C., Schumann, U.D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D.J., Sykes, S., Thines, M., van de Vondervoort, P.J.I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B.C., van West, P., Ristaino, J., Govers, F., Birch, P.R.J., Whisson, S.C., Judelson, H.S., and Nusbaum, C. 2009.

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393-398.

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July 2009

Jonathan Jones Group

Pel MA, Foster SJ, Park TH, Rietman H, van Arkel G, Jones JDG, van Eck HJ, Jacobsen E, Visser RGF, van der Vossen EAG (2009)

Mapping and cloning of late blight resistance genes from Solanum venturii using an interspecific candidate gene approach. Molecular Plant-Microbe Interactions 22:601-615.

July 2009

Jonathan Jones Group

Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA. (2009)

A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact. 2009 Jan;22(1):52-62. PubMed PMID: 19061402.

June 2009

Jonathan Jones Group

Thines M, Choi YJ, Kemen E, Ploch S, Holub EB, Shin HD, Jones JD. (2009)

A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae). Persoonia. 2009 Jun;22:123-8. Epub 2009 May 26. PubMed PMID: 20198144; PubMed Central PMCID: PMC2789544.

May 2009

Jonathan Jones Group

Hofius D, Schultz-Larsen T, Joensen J, Tsitsigiannis DI, Petersen NH, Mattsson O, Jørgensen LB, Jones JD, Mundy J, Petersen M. (2009)

Autophagic components contribute to hypersensitive cell death in Arabidopsis. Cell. 2009 May 15;137(4):773-83. PubMed PMID: 19450522.

May 2009

Jonathan Jones Group

Grant MR, Jones JD. (2009)

Hormone (dis)harmony moulds plant health and disease. Science. 2009 May 8;324(5928):750-2. PubMed PMID: 19423816.

April 2009

Jonathan Jones Group

Foster SJ, Park TH, Pel M, Brigneti G, Sliwka J, Jagger L, can der Vossen E, Jones JDG (2009)

Rpi-vnt1.1, a TM-22 homology from Solanum venturii, confers resistance to potato late blight. Molecular Plant-Microbe Interactions 22:589-600.

March 2009

Jonathan Jones Group

Bari R, Jones JD. (2009)

Role of plant hormones in plant defence responses. Plant Mol Biol. 2009 Mar;69(4):473-88. Epub 2008 Dec 16. Review. PubMed PMID: 19083153.

March 2009

Jonathan Jones Group

Sohn KH, Zhang Y, Jones JD. (2009)

The Pseudomonas syringae effector protein, AvrRPS4, requires in planta processing and the KRVY domain to function. Plant J. 2009 Mar;57(6):1079-91. Epub 2009 Jan 17. PubMed PMID: 19054367.

February 2009

Bioinformatics, Jonathan Jones Group

Daniel MacLean, Jonathan DG Jones, and David J Studholme. (2009)

Application of ’next-generation’ sequencing technologies to microbial genetics. Nature Reviews Microbiology, 7(4):287–296