Publications

September 2014

Bioinformatics

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK (2014)

The GOBLET Training Portal: A Global Repository of Bioinformatics Training Materials, Courses and Trainers. Bioinformatics (2014) doi: 10.1093/bioinformatics/btu601

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June 2011

Bioinformatics, Jonathan Jones Group

Alexandre Robert-Seilaniantz, Dan MacLean, Yusuke Jikumaru, Lionel Hill, Shinjiro Yamaguchi, Yuji Kamiya, and Jonathan DG Jones. (2011)

The microrna mir393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates. The Plant Journal, 67(2):218–231

November 2014

Jonathan Jones Group, Proteomics, Silke Robatzek Group

Caillaud MC, Wirthmueller L, Sklenar J, Findlay K, Piquerez SJ, Jones AM, Robatzek S, Jones JD, Faulkner C (2014)

The Plasmodesmal Protein PDLP1 Localises to Haustoria-Associated Membranes during Downy Mildew Infection and Regulates Callose Deposition. PLoS Pathog. 2014 Nov 13;10(11):e1004496. doi: 10.1371/journal.ppat.1004496.

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May 2013

Proteomics, Silke Robatzek Group

Liebrand, T.W.H. van den Berg, G.C.M., Zhang, Z., Smit, P., Cordewener, J.H.G., America, A.H.P., Sklenar, J., Jones, A.M.E., Tameling, W.I.L., Robatzek, S., Thomma, B.P.H.J. and Joosten, M.H.A.J. (2013)

The receptor-like kinase SOBIR1/EVR interacts with receptor-like proteins in plant immunity against fungal infection. Proc. Natl. Acad. Sci. USA. 110: 10010-10015.

October 2014

Bioinformatics

Younsi R and MacLean D (2014)

Using 2k + 2 bubble searches to find Single Nucleotide Polymorphisms in k-mer graphs. Bioinformatics 2014 Oct 24. pii: btu706. [Epub ahead of print]

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March 2013

Bioinformatics

Rhys A Farrer, Daniel A Henk, Dan MacLean, David J Studholme, and Matthew C Fisher. (2013)

Using false discovery rates to benchmark snp-callers in next-generation sequencing projects. Scientific Reports, 3