Publications

July 2018

Bioinformatics

Toda Y, Toh S, Bourdais G, Robatzek S, Maclean D, Kinoshita T (2018)

DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement. bioRxiv preprint Jul 9, 2018 doi: https://doi.org/10.1101/365098

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July 2018

Sophien Kamoun Group

De la Concepcion JC, Franceschetti M, Maqbool A, Saitoh H, Terauchi R, Kamoun S, Banfield MJ

Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen. Nature Plants (2018) https://doi.org/10.1038/s41477-018-0194-x

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July 2018

Sophien Kamoun Group

Langner T, Kamoun S, Belhaj K (2018)

CRISPR Crops: Plant Genome Editing Toward Disease Resistance. Annu Rev Phytopathol. 2018 Jul 5. doi: 10.1146/annurev-phyto-080417-050158.

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July 2018

Sophien Kamoun Group

Pais M, Yoshida K, Giannakopoulou A, Pel MA, Cano LM, Oliva RF, Witek K, Lindqvist-Kreuze H, Vleeshouwers VGAA, Kamoun S (2018)

Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen. BMC Evol Biol. 2018 Jul 5;18(1):93. doi: 10.1186/s12862-018-1201-6.

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July 2018

Bioinformatics, Jonathan Jones Group

Shrestha RK, Ding P, Jones JDG, MacLean D (2018)

A workflow for simplified analysis of ATAC-cap-seq data in R. GigaScience, 2017, 1–7. DOI: 10.1093/gigascience/giy080

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June 2018

Cyril Zipfel Group

Engelsdorf T, Gigli-Bisceglia N, Veerabagu M, McKenna JF, Vaahtera L, Augstein F, Van der Does D, Zipfel C, Hamann T (2018)

The plant cell wall integrity maintenance and immune signaling systems cooperate to control stress responses in Arabidopsis thaliana. Sci Signal. 2018 Jun 26;11(536). pii: eaao3070. doi: 10.1126/scisignal.aao3070.

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June 2018

Sophien Kamoun Group

Dagdas YF, Pandey P, Tumtas Y, Sanguankiattichai N, Belhaj K, Duggan C, Leary AY, Segretin M, Contreras M, Savage Z, Khandare VS, Kamoun S, Bozkurt TO (2018)

Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. Elife. 2018 Jun 22;7. pii: e37476. doi: 10.7554/eLife.37476.

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June 2018

Sophien Kamoun Group

Wu CH, Derevnina L, Kamoun S (2018)

Receptor networks underpin plant immunity. Science 22 Jun 2018: Vol. 360, Issue 6395, pp. 1300-1301 DOI: 10.1126/science.aat2623

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June 2018

Cyril Zipfel Group

Kunwar S, Iriarte F, Fan Q, da Silva EE, Ritchie L, Nguyen NS, Freeman JH, Stall RE, Jones JB, Minsavage GV, Colee J, Scott J, Vallad GE, Zipfel C, Horvath D, Westwood J, Hutton S, Paret ML (2018)

Transgenic expression of EFR and Bs2 genes for field management of bacterial wilt and bacterial spot of tomato. Phytopathology. 2018 Jun 20. doi: 10.1094/PHYTO-12-17-0424-R.

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June 2018

Matthew Moscou Group

Omidvar V, Dugyala S, Li F, Rottschaefer S, Miller M, Ayliffe M, Moscou MJ, Kianian SF, Figueroa M (2018)

Detection of race-specific resistance against Puccinia coronata f. sp. avenae in Brachypodium species. Phytopathology. 2018 Jun 20. doi: 10.1094/PHYTO-03-18-0084-R.

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