Publications

September 2021

Bioinformatics, Jonathan Jones Group

Furzer O, Cevik V, Fairhead S, Bailey K, Redkar A, Schudmoma C, MacLean D, Holub EB, Jones JDG (2021)

An improved assembly of the Albugo candida Ac2V genome reveals the expansion of the “CCG” class of effectors. Mol Plant Microbe Interact. 2021 Sep 21. doi: 10.1094/MPMI-04-21-0075-R.

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August 2021

Bioinformatics, Proteomics, Sophien Kamoun Group

Derevnina L, Contreras MP, Adachi H, Upson J, Vergara Cruces A, Xie R, Skłenar J, Menke FLH, Mugford ST, MacLean D, Ma W, Hogenhout S, Goverse A, Maqbool A, Wu CH, Kamoun S (2021)

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. PLoS Biol. 2021 Aug 23;19(8):e3001136. doi: 10.1371/journal.pbio.3001136.

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August 2021

Bioinformatics, Jonathan Jones Group

Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG (2021)

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. J Exp Bot. 2021 Aug 13:erab373. doi: 10.1093/jxb/erab373.

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July 2021

Bioinformatics

Kristianingsih R, MacLean D (2021)

Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks. BMC Bioinformatics. 2021 Jul 17;22(1):372. doi: 10.1186/s12859-021-04293-3.

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March 2021

Bioinformatics, Jonathan Jones Group

Furzer OJ, Cevik V, Fairhead S, Bailey K, Redkar A, Schudoma C, MacLean D, Holub EB, Jones JDG (2021)

An improved assembly of the Albugo candida Ac2V genome reveals the expansion of the “CCG” class of effectors. bioRxiv preprint Mar 29, 2021 doi: https://doi.org/10.1101/2021.03.29.437041

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February 2021

Bioinformatics, Proteomics, Sophien Kamoun Group, Wenbo Ma Group

Derevnina L, Contreras MP, Adachi H, Upson J, Cruces AV, Xie R, Sklenar J, Menke FLH, Mugford ST, MacLean D, Ma W, Hogenhout SA, Goverse A, Maqbool A, Wu CH, Kamoun S (2021)

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. bioRxiv preprint Feb 03, 2021 doi: https://doi.org/10.1101/2021.02.03.429184

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October 2020

Bioinformatics, Cyril Zipfel Group

Derkacheva M, Yu G, Rufian JS, Jiang S, Derbyshire P, Morcillo R, Stransfeld L, Wei Y, Menke F, Zipfel C, Macho A (2020)

The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 homeostasis and is targeted by a bacterial type-III effector. bioRxiv preprint Oct 26, 2020 doi: https://doi.org/10.1101/2020.10.25.354514

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August 2020

Bioinformatics, Cyril Zipfel Group, Proteomics

Thor K, Jiang S, Michard E, George J, Scherzer S, Huang S, Dindas J, Derbyshire P, Leitão N, DeFalco TA, Köster P, Hunter K, Kimura S, Gronnier J, Stransfeld L, Kadota Y, Bücherl CA, Charpentier M, Wrzaczek M, MacLean D, Oldroyd GED, Menke FLH, M. Roelfsema MRG, Hedrich R, Feijó J, Zipfel C (2020)

The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature. 25 August 2020. DOI: 10.1038/s41586-020-2702-1

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July 2020

Bioinformatics

Kristianingsih R, MacLean D (2020)

Accurate plant pathogen effector protein classification ab initio with deepredeff, an ensemble of convolutional neural networks. bioRxiv preprint July 09, 2020 doi: https://doi.org/10.1101/2020.07.08.193250

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June 2020

Bioinformatics, Jonathan Jones Group

Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG (2020)

Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors. bioRxiv preprint June 18, 2020 doi: https://doi.org/10.1101/2020.06.17.157040

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