Publications

January 2020

Bioinformatics, Sophien Kamoun Group

Langner T, Harant A, Gómez-Luciano LB, Shrestha RK, Win J, Kamoun S (2020)

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungus. bioRxiv preprint Jan 11, 2020 doi: https://doi.org/10.1101/2020.01.10.901983

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January 2020

Bioinformatics, Jonathan Jones Group

Ding P, Ngou BPM, Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG (2020)

High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. Plant Biotechnol J. 2020 Jan 8. doi: 10.1111/pbi.13327.

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October 2019

Bioinformatics

MacLean D (2019)

R Bioinformatics Cookbook: Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis. Packt Publishing.

September 2019

Bioinformatics, Jonathan Jones Group

Ding P, Ngou BPM, Oliver J. Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG (2019)

High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. bioRxiv preprint Sep 23, 2019 doi: https://doi.org/10.1101/775973

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September 2019

Bioinformatics, Sophien Kamoun Group

De la Concepcion JC, Franceschetti M, MacLean D, Terauchi R, Kamoun S, Banfield MJ (2019)

Protein engineering expands the effector recognition profile of a rice NLR immune receptor. Elife. 2019 Sep 19;8. pii: e47713. doi: 10.7554/eLife.47713.

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May 2019

Bioinformatics

MacLean D (2019)

A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions. bioRxiv preprint Apr 28, 2019 doi: https://doi.org/10.1101/618926

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January 2019

Bioinformatics

Rallapalli G, Corredor-Moreno P, Chalstrey E, Page M, MacLean D (2019)

Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. BMC Bioinformatics. 2019 Jan 7;20(1):9. doi: 10.1186/s12859-018-2515-5.

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November 2018

Bioinformatics

Bourdais G, McLachlan DH, Rickett LM, Zhou J, Siwoszek A, Häweker H, Hartley M, Kuhn H, Morris RJ, MacLean D, Robatzek S (2018)

The use of quantitative imaging to investigate regulators of membrane trafficking in Arabidopsis stomatal closure. Traffic. 2018 Nov 16. doi: 10.1111/tra.12625.

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August 2018

Bioinformatics, Jonathan Jones Group, Proteomics

Wirthmueller L, Asai S, Rallapalli G, Sklenar J, Fabro G, Kim DS, Lintermann R, Jaspers P, Wrzaczek M, Kangasjärvi J, MacLean D, Menke FLH, Banfield MJ, Jones JDG (2018)

Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1. New Phytol. 2018 Oct;220(1):232-248. doi: 10.1111/nph.15277.

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July 2018

Bioinformatics

Toda Y, Toh S, Bourdais G, Robatzek S, Maclean D, Kinoshita T (2018)

DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement. bioRxiv preprint Jul 9, 2018 doi: https://doi.org/10.1101/365098

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