Publications

September 2021

Cyril Zipfel Group, Proteomics

Bender KW, Couto D, Kadota Y, Macho AP, Sklenar J, Derbyshire P, Bjornson M, DeFalco TA, Petriello A, Font Farre M, Schwessinger B, Ntoukakis V, Stransfeld L, Jones AME, Menke FLH, Cyril Zipfel C (2021)

Activation loop phosphorylaton of a non-RD receptor kinase initiates plant innate immune signaling. PNAS September 21, 2021 118 (38) e2108242118; https://doi.org/10.1073/pnas.2108242118

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August 2021

Bioinformatics, Proteomics, Sophien Kamoun Group

Derevnina L, Contreras MP, Adachi H, Upson J, Vergara Cruces A, Xie R, Skłenar J, Menke FLH, Mugford ST, MacLean D, Ma W, Hogenhout S, Goverse A, Maqbool A, Wu CH, Kamoun S (2021)

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. PLoS Biol. 2021 Aug 23;19(8):e3001136. doi: 10.1371/journal.pbio.3001136.

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August 2021

Bioinformatics, Jonathan Jones Group

Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG (2021)

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. J Exp Bot. 2021 Aug 13:erab373. doi: 10.1093/jxb/erab373.

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August 2021

Synthetic Biology

Bentham AR, Youles M, Mendel MN, Varden FA, De la Concepcion JC, Banfield MJ (2021)

pOPIN-GG: A resource for modular assembly in protein expression vectors. bioRxiv preprint Aug 10, 2021 doi: https://doi.org/10.1101/2021.08.10.455798

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July 2021

Matthew Moscou Group, Proteomics, Sophien Kamoun Group

Białas A, Langner T, Harant A, Contreras MP, Stevenson CE, Lawson DM, Sklenar J, Kellner R, Moscou MJ, Terauchi R, Banfield MJ, Kamoun S (2021)

Two NLR immune receptors acquired high-affinity binding to a fungal effector through convergent evolution of their integrated domain. Elife. 2021 Jul 21;10:e66961. doi: 10.7554/eLife.66961.

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July 2021

Bioinformatics

Kristianingsih R, MacLean D (2021)

Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks. BMC Bioinformatics. 2021 Jul 17;22(1):372. doi: 10.1186/s12859-021-04293-3.

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June 2021

Jonathan Jones Group, Proteomics

Sun X, Lapin D, Feehan JM, Stolze SC, Kramer K, Dongus JA, Rzemieniewski J, Blanvillain-Baufumé S, Harzen A, Bautor J, Derbyshire P, Menke FLH, Finkemeier I, Nakagami H, Jones JDG, Parker JE (2021)

Pathogen effector recognition-dependent association of NRG1 with EDS1 and SAG101 in TNL receptor immunity. Nat Commun. 2021 Jun 7;12(1):3335. doi: 10.1038/s41467-021-23614-x.

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May 2021

Cyril Zipfel Group, Proteomics

Bender KW, Couto D, Kadota Y, Macho AP, Sklenar J, Bjornson M, Petriello A, Font Farre M, Schwessinger B, Ntoukakis V, Stransfeld L, Jones AME, Menke FLH, Zipfel C (2021)

Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling. bioRxiv preprint May 01, 2021 doi: https://doi.org/10.1101/2021.05.01.442257

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March 2021

Bioinformatics, Jonathan Jones Group

Furzer OJ, Cevik V, Fairhead S, Bailey K, Redkar A, Schudoma C, MacLean D, Holub EB, Jones JDG (2021)

An improved assembly of the Albugo candida Ac2V genome reveals the expansion of the “CCG” class of effectors. bioRxiv preprint Mar 29, 2021 doi: https://doi.org/10.1101/2021.03.29.437041

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March 2021

Proteomics, Sophien Kamoun Group

Petre B, Contreras MP, Bozkurt TO, Schattat MH, Sklenar J, Schornack S, Abd-El-Haliem A, Castells-Graells R, Lozano-Duran R, Dagdas YF, Menke FLH, Jones AME, Vossen JH, Robatzek S, Kamoun S, Win J (2021)

Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. The Plant Cell, 2021;, koab069, https://doi.org/10.1093/plcell/koab069

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