Publications

September 2020

Cyril Zipfel Group, Proteomics

Grubb L, Derbyshire P, Dunning K, Zipfel C, Menke FLH, Monaghan J (2020)

Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings. bioRxiv preprint Sept 17, 2020 doi: https://doi.org/10.1101/2020.09.16.299883

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August 2020

Bioinformatics, Cyril Zipfel Group, Proteomics

Thor K, Jiang S, Michard E, George J, Scherzer S, Huang S, Dindas J, Derbyshire P, Leitão N, DeFalco TA, Köster P, Hunter K, Kimura S, Gronnier J, Stransfeld L, Kadota Y, Bücherl CA, Charpentier M, Wrzaczek M, MacLean D, Oldroyd GED, Menke FLH, M. Roelfsema MRG, Hedrich R, Feijó J, Zipfel C (2020)

The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature. 25 August 2020. DOI: 10.1038/s41586-020-2702-1

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July 2020

Bioinformatics

Kristianingsih R, MacLean D (2020)

Accurate plant pathogen effector protein classification ab initio with deepredeff, an ensemble of convolutional neural networks. bioRxiv preprint July 09, 2020 doi: https://doi.org/10.1101/2020.07.08.193250

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July 2020

Sophien Kamoun Group, Tissue Culture & Transformation

Paulus JK, Kourelis J, Ramasubramanian S, Homma F, Godson A, Hörger AC, Hong TN, Krahn D, Carballo LO, Wang S, Win J, Smoker M, Kamoun S, Dong S, van der Hoorn RAL (2020)

Extracellular proteolytic cascade in tomato activates immune protease Rcr3. PNAS first published July 2, 2020 https://doi.org/10.1073/pnas.1921101117

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June 2020

Bioinformatics, Jonathan Jones Group

Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG (2020)

Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors. bioRxiv preprint June 18, 2020 doi: https://doi.org/10.1101/2020.06.17.157040

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April 2020

Jonathan Jones Group, Proteomics

Guo H, Ahn HK, Sklenar J, Huang J, Ma Y, Ding P, Menke FLH, Jones JDG (2020)

Phosphorylation-Regulated Activation of the Arabidopsis RRS1-R/RPS4 Immune Receptor Complex Reveals Two Distinct Effector Recognition Mechanisms. Cell Host Microbe. 2020 Mar 29. pii: S1931-3128(20)30172-4. doi: 10.1016/j.chom.2020.03.008.

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February 2020

Jonathan Jones Group, Synthetic Biology

Ngou BPM, Ahn HK, Ding P, Redkar A, Brown H, Ma Y, Youles M, Tomlinson L, Jones JDG (2020)

Estradiol-inducible AvrRps4 expression reveals distinct properties of TIR-NLR-mediated effector-triggered immunity. J Exp Bot. 2020 Feb 12. pii: erz571. doi: 10.1093/jxb/erz571.

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February 2020

Bioinformatics, Nick Talbot Group

Oses-Ruiz M, Martin-Urdiroz M, Soanes DM, Kershaw MJ, Cruz-Mireles N, Valdovinos-Ponce G, Molinari C, Littlejohn GR, Derbyshire P, Menke F, Valent B, Talbot NJ (2020)

A hierarchical transcriptional network controls appressorium-mediated plant infection by the rice blast fungus Magnaporthe oryzae. bioRxiv preprint Feb 06, 2020 doi: https://doi.org/10.1101/2020.02.05.936203

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January 2020

Bioinformatics, Sophien Kamoun Group

Langner T, Harant A, Gómez-Luciano LB, Shrestha RK, Win J, Kamoun S (2020)

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungus. bioRxiv preprint Jan 11, 2020 doi: https://doi.org/10.1101/2020.01.10.901983

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January 2020

Bioinformatics, Jonathan Jones Group

Ding P, Ngou BPM, Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG (2020)

High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. Plant Biotechnol J. 2020 Jan 8. doi: 10.1111/pbi.13327.

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