Publications

December 2020

Cyril Zipfel Group, Proteomics

Goto Y, Maki N, Sklenar J, Derbyshire P, Menke FLH, Zipfel C, Kadota Y, Shirasu K (2020)

The phagocytosis oxidase/Bem1p (PB1) domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. bioRxiv preprint Dec 29, 2020 doi: https://doi.org/10.1101/2020.12.28.423414

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December 2020

Jonathan Jones Group, Proteomics

Sun X, Lapin D, Feehan JM, Stolze SC, Kramer K, Dongus JA, Rzemieniewski J, Blanvillain-Baufume S, Harzen A, Bautor J, Derbyshire P, Menke FLH, Finkemeier I, Nakagami H, Jones JDG, Parker JE (2020)

Pathogen effector recognition-dependent association of NRG1 with EDS1 and SAG101 in TNL receptor immunity. bioRxiv preprint Dec 22, 2020 doi: https://doi.org/10.1101/2020.12.21.423810

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October 2020

Bioinformatics, Cyril Zipfel Group

Derkacheva M, Yu G, Rufian JS, Jiang S, Derbyshire P, Morcillo R, Stransfeld L, Wei Y, Menke F, Zipfel C, Macho A (2020)

The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 homeostasis and is targeted by a bacterial type-III effector. bioRxiv preprint Oct 26, 2020 doi: https://doi.org/10.1101/2020.10.25.354514

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October 2020

Proteomics

Hegenauer V, Slaby P, Körner M, Bruckmüller JA, Burggraf R, Albert I, Kaiser B, Löffelhardt B, Droste-Borel I, Sklenar J, Menke FLH, Maček B, Ranjan A, Sinha N, Nürnberger T, Felix G, Krause K, Stahl M, Albert M (2020)

The tomato receptor CuRe1 senses a cell wall protein to identify Cuscuta as a pathogen. Nat Commun. 2020 Oct 20;11(1):5299. doi: 10.1038/s41467-020-19147-4.

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September 2020

Proteomics, Sophien Kamoun Group

Petre B, Contreras MP, Bozkurt TO, Schattat MH, Sklenar J, Schornack S, Abd-El-Haliem A, Castells-Graells R, Lozano-Duran R, Dagdas YF, Menke FLH, Jones AME, Vossen JH, Robatzek S, Kamoun S, Win J (2020)

Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. bioRxiv preprint Sept 24, 2020 doi: https://doi.org/10.1101/2020.09.24.308585

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September 2020

Cyril Zipfel Group, Proteomics

Grubb L, Derbyshire P, Dunning K, Zipfel C, Menke FLH, Monaghan J (2020)

Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings. bioRxiv preprint Sept 17, 2020 doi: https://doi.org/10.1101/2020.09.16.299883

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August 2020

Bioinformatics, Cyril Zipfel Group, Proteomics

Thor K, Jiang S, Michard E, George J, Scherzer S, Huang S, Dindas J, Derbyshire P, Leitão N, DeFalco TA, Köster P, Hunter K, Kimura S, Gronnier J, Stransfeld L, Kadota Y, Bücherl CA, Charpentier M, Wrzaczek M, MacLean D, Oldroyd GED, Menke FLH, M. Roelfsema MRG, Hedrich R, Feijó J, Zipfel C (2020)

The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature. 25 August 2020. DOI: 10.1038/s41586-020-2702-1

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July 2020

Bioinformatics

Kristianingsih R, MacLean D (2020)

Accurate plant pathogen effector protein classification ab initio with deepredeff, an ensemble of convolutional neural networks. bioRxiv preprint July 09, 2020 doi: https://doi.org/10.1101/2020.07.08.193250

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July 2020

Sophien Kamoun Group, Tissue Culture & Transformation

Paulus JK, Kourelis J, Ramasubramanian S, Homma F, Godson A, Hörger AC, Hong TN, Krahn D, Carballo LO, Wang S, Win J, Smoker M, Kamoun S, Dong S, van der Hoorn RAL (2020)

Extracellular proteolytic cascade in tomato activates immune protease Rcr3. PNAS first published July 2, 2020 https://doi.org/10.1073/pnas.1921101117

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June 2020

Bioinformatics, Jonathan Jones Group

Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG (2020)

Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors. bioRxiv preprint June 18, 2020 doi: https://doi.org/10.1101/2020.06.17.157040

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