Publications

February 2020

Jonathan Jones Group, Synthetic Biology

Ngou BPM, Ahn HK, Ding P, Redkar A, Brown H, Ma Y, Youles M, Tomlinson L, Jones JDG (2020)

Estradiol-inducible AvrRps4 expression reveals distinct properties of TIR-NLR-mediated effector-triggered immunity. J Exp Bot. 2020 Feb 12. pii: erz571. doi: 10.1093/jxb/erz571.

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February 2020

Bioinformatics, Nick Talbot Group

Oses-Ruiz M, Martin-Urdiroz M, Soanes DM, Kershaw MJ, Cruz-Mireles N, Valdovinos-Ponce G, Molinari C, Littlejohn GR, Derbyshire P, Menke F, Valent B, Talbot NJ (2020)

A hierarchical transcriptional network controls appressorium-mediated plant infection by the rice blast fungus Magnaporthe oryzae. bioRxiv preprint Feb 06, 2020 doi: https://doi.org/10.1101/2020.02.05.936203

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January 2020

Bioinformatics, Sophien Kamoun Group

Langner T, Harant A, Gómez-Luciano LB, Shrestha RK, Win J, Kamoun S (2020)

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungus. bioRxiv preprint Jan 11, 2020 doi: https://doi.org/10.1101/2020.01.10.901983

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January 2020

Bioinformatics, Jonathan Jones Group

Ding P, Ngou BPM, Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG (2020)

High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. Plant Biotechnol J. 2020 Jan 8. doi: 10.1111/pbi.13327.

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October 2019

Bioinformatics

MacLean D (2019)

R Bioinformatics Cookbook: Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis. Packt Publishing.

October 2019

Nick Talbot Group, Proteomics

Ryder LS, Dagdas YF, Kershaw MJ, Venkataraman C, Madzvamuse A, Yan, X Cruz-Mireles N, Soanes DM, Oses-Ruiz M, Styles V, Sklenar J, Menke FLH, Talbot NJ (2019)

A sensor kinase controls turgor-driven plant infection by the rice blast fungus. Nature 09 Oct 2019. doi: https://doi.org/10.1038/s41586-019-1637-x

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September 2019

Bioinformatics, Jonathan Jones Group

Ding P, Ngou BPM, Oliver J. Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG (2019)

High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. bioRxiv preprint Sep 23, 2019 doi: https://doi.org/10.1101/775973

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September 2019

Bioinformatics, Sophien Kamoun Group

De la Concepcion JC, Franceschetti M, MacLean D, Terauchi R, Kamoun S, Banfield MJ (2019)

Protein engineering expands the effector recognition profile of a rice NLR immune receptor. Elife. 2019 Sep 19;8. pii: e47713. doi: 10.7554/eLife.47713.

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September 2019

Proteomics

Liu Y, Maierhofer T, Rybak K, Sklenar J, Breakspear A, Johnston MG, Fliegmann J, Huang S, Roelfsema MRG, Felix G, Faulkner C, Menke FL, Geiger D, Hedrich R, Robatzek S (2019)

Anion channel SLAH3 is a regulatory target of chitin receptor-associated kinase PBL27 in microbial stomatal closure. Elife. 2019 Sep 16;8. pii: e44474. doi: 10.7554/eLife.44474.

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July 2019

Proteomics, Sophien Kamoun Group

Zess EK, Jensen C, Cruz-Mireles N, De la Concepcion JC, Sklenar J, Stephani M, Imre R, Roitinger E, Hughes R, Belhaj K, Mechtler K, Menke FLH, Bozkurt T, Banfield MJ, Kamoun S, Maqbool A, Dagdas YF (2019)

N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PLoS Biol. 2019 Jul 22;17(7):e3000373. doi: 10.1371/journal.pbio.3000373.

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